Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15878 | 5' | -59.4 | NC_004065.1 | + | 56146 | 1.11 | 0.001963 |
Target: 5'- cGGCGGCCCACACACACGGCGUGACGGc -3' miRNA: 3'- -CCGCCGGGUGUGUGUGCCGCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 141633 | 0.71 | 0.609236 |
Target: 5'- uGGCGGCUCgGCgACGgAgGGCGgUGGCGGu -3' miRNA: 3'- -CCGCCGGG-UG-UGUgUgCCGC-ACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 78495 | 0.71 | 0.651354 |
Target: 5'- uGCGGCCCuugccgccguccaggGCGCGgAUGGCGaUGuCGGa -3' miRNA: 3'- cCGCCGGG---------------UGUGUgUGCCGC-ACuGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 120422 | 0.66 | 0.897428 |
Target: 5'- cGCGGCCCGgGggucgaGCGCGGCcUGAUa- -3' miRNA: 3'- cCGCCGGGUgUg-----UGUGCCGcACUGcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 130058 | 0.75 | 0.40328 |
Target: 5'- cGCGGCCCgaGCACGcCGCGGCG-GugGu -3' miRNA: 3'- cCGCCGGG--UGUGU-GUGCCGCaCugCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 119188 | 0.75 | 0.411351 |
Target: 5'- gGGCGGCCCGCGCcccGCACuGGUGccUGGCa- -3' miRNA: 3'- -CCGCCGGGUGUG---UGUG-CCGC--ACUGcc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 195578 | 0.73 | 0.524491 |
Target: 5'- uGCGuGCCCACGCu--CGG-GUGACGGc -3' miRNA: 3'- cCGC-CGGGUGUGuguGCCgCACUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 105547 | 0.73 | 0.533724 |
Target: 5'- cGCGGCCCuggacccgGCGCagcgGCACGGCGcgccgucGGCGGg -3' miRNA: 3'- cCGCCGGG--------UGUG----UGUGCCGCa------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 122222 | 0.72 | 0.561747 |
Target: 5'- uGGUGGCCCGCucGCcCACGGCcaaguauccgGGCGGc -3' miRNA: 3'- -CCGCCGGGUG--UGuGUGCCGca--------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 230015 | 0.72 | 0.599685 |
Target: 5'- cGGgGGCCCGCGCGCACuca--GACGGc -3' miRNA: 3'- -CCgCCGGGUGUGUGUGccgcaCUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 35210 | 0.72 | 0.580651 |
Target: 5'- uGGCGGCCaC-CGC-CACGGCGUucaggggcucGACGa -3' miRNA: 3'- -CCGCCGG-GuGUGuGUGCCGCA----------CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 153624 | 0.72 | 0.556107 |
Target: 5'- gGGCGGCgCCACuCGgACGGCGgcgagcucauccgcGGCGGc -3' miRNA: 3'- -CCGCCG-GGUGuGUgUGCCGCa-------------CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 105848 | 0.78 | 0.301347 |
Target: 5'- cGGCGGCCUGCGCGCAcacccuggaguCGGUGuUGACGc -3' miRNA: 3'- -CCGCCGGGUGUGUGU-----------GCCGC-ACUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 51920 | 0.72 | 0.590154 |
Target: 5'- aGCGGCCUGCAC-CGCagguacucaGGCaGUGugGGa -3' miRNA: 3'- cCGCCGGGUGUGuGUG---------CCG-CACugCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 184198 | 0.77 | 0.334619 |
Target: 5'- cGGcCGGUCCGauacaugcccaccCGCACGCGGCGUGugGc -3' miRNA: 3'- -CC-GCCGGGU-------------GUGUGUGCCGCACugCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 133055 | 0.73 | 0.533724 |
Target: 5'- cGGaCGGCCgGCGCagcagGCGCGGCagcaGACGGg -3' miRNA: 3'- -CC-GCCGGgUGUG-----UGUGCCGca--CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 78858 | 0.72 | 0.590154 |
Target: 5'- gGGCGGCCgGCGCGCcagcucGCGGuCGccGACGa -3' miRNA: 3'- -CCGCCGGgUGUGUG------UGCC-GCa-CUGCc -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 200892 | 0.71 | 0.637954 |
Target: 5'- cGGCuGCCCGuCGCGCugGGCGac-CGGc -3' miRNA: 3'- -CCGcCGGGU-GUGUGugCCGCacuGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 90025 | 0.76 | 0.363715 |
Target: 5'- cGGCGGCgucagcuCCACGCuCAUGGCGacGGCGGg -3' miRNA: 3'- -CCGCCG-------GGUGUGuGUGCCGCa-CUGCC- -5' |
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15878 | 5' | -59.4 | NC_004065.1 | + | 132826 | 0.73 | 0.497178 |
Target: 5'- aGGCuGGCCUACAgGCGCaGCGcGACGa -3' miRNA: 3'- -CCG-CCGGGUGUgUGUGcCGCaCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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