miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 138821 0.7 0.694153
Target:  5'- cGGCGGCgccgaugCCGCGCACgccgACGGCGcuuccGCGGc -3'
miRNA:   3'- -CCGCCG-------GGUGUGUG----UGCCGCac---UGCC- -5'
15878 5' -59.4 NC_004065.1 + 78495 0.71 0.651354
Target:  5'- uGCGGCCCuugccgccguccaggGCGCGgAUGGCGaUGuCGGa -3'
miRNA:   3'- cCGCCGGG---------------UGUGUgUGCCGC-ACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 153624 0.72 0.556107
Target:  5'- gGGCGGCgCCACuCGgACGGCGgcgagcucauccgcGGCGGc -3'
miRNA:   3'- -CCGCCG-GGUGuGUgUGCCGCa-------------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 90025 0.76 0.363715
Target:  5'- cGGCGGCgucagcuCCACGCuCAUGGCGacGGCGGg -3'
miRNA:   3'- -CCGCCG-------GGUGUGuGUGCCGCa-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 196104 0.69 0.750569
Target:  5'- cGCGGCUCGC-CACcgccaACGGCGgguACGGc -3'
miRNA:   3'- cCGCCGGGUGuGUG-----UGCCGCac-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 102028 0.69 0.731444
Target:  5'- cGGCGGgCCACcucggugACcCGCGGCGgccgGGCGu -3'
miRNA:   3'- -CCGCCgGGUG-------UGuGUGCCGCa---CUGCc -5'
15878 5' -59.4 NC_004065.1 + 141633 0.71 0.609236
Target:  5'- uGGCGGCUCgGCgACGgAgGGCGgUGGCGGu -3'
miRNA:   3'- -CCGCCGGG-UG-UGUgUgCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 184198 0.77 0.334619
Target:  5'- cGGcCGGUCCGauacaugcccaccCGCACGCGGCGUGugGc -3'
miRNA:   3'- -CC-GCCGGGU-------------GUGUGUGCCGCACugCc -5'
15878 5' -59.4 NC_004065.1 + 108788 0.69 0.723141
Target:  5'- uGGCGGCgUCGa--ACcUGGCGUGGCGGc -3'
miRNA:   3'- -CCGCCG-GGUgugUGuGCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 105848 0.78 0.301347
Target:  5'- cGGCGGCCUGCGCGCAcacccuggaguCGGUGuUGACGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGU-----------GCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 200892 0.71 0.637954
Target:  5'- cGGCuGCCCGuCGCGCugGGCGac-CGGc -3'
miRNA:   3'- -CCGcCGGGU-GUGUGugCCGCacuGCC- -5'
15878 5' -59.4 NC_004065.1 + 103779 0.7 0.7045
Target:  5'- gGGCGGCUCGaucccCGCACGgGCGUGAa-- -3'
miRNA:   3'- -CCGCCGGGUgu---GUGUGC-CGCACUgcc -5'
15878 5' -59.4 NC_004065.1 + 51920 0.72 0.590154
Target:  5'- aGCGGCCUGCAC-CGCagguacucaGGCaGUGugGGa -3'
miRNA:   3'- cCGCCGGGUGUGuGUG---------CCG-CACugCC- -5'
15878 5' -59.4 NC_004065.1 + 122222 0.72 0.561747
Target:  5'- uGGUGGCCCGCucGCcCACGGCcaaguauccgGGCGGc -3'
miRNA:   3'- -CCGCCGGGUG--UGuGUGCCGca--------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 195578 0.73 0.524491
Target:  5'- uGCGuGCCCACGCu--CGG-GUGACGGc -3'
miRNA:   3'- cCGC-CGGGUGUGuguGCCgCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130058 0.75 0.40328
Target:  5'- cGCGGCCCgaGCACGcCGCGGCG-GugGu -3'
miRNA:   3'- cCGCCGGG--UGUGU-GUGCCGCaCugCc -5'
15878 5' -59.4 NC_004065.1 + 171702 0.68 0.777177
Target:  5'- aGCuGGCCUGCACGC-UGcGCGUcauGACGGa -3'
miRNA:   3'- cCG-CCGGGUGUGUGuGC-CGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 123022 0.69 0.760432
Target:  5'- uGGCGGCCacguacucgucagggAUGCACGCGGCGaGcAUGGc -3'
miRNA:   3'- -CCGCCGGg--------------UGUGUGUGCCGCaC-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 79612 0.69 0.750569
Target:  5'- aGGcCGGaCCCgcuGCGCGCGCGGaCGcuGCGGg -3'
miRNA:   3'- -CC-GCC-GGG---UGUGUGUGCC-GCacUGCC- -5'
15878 5' -59.4 NC_004065.1 + 63057 0.69 0.73603
Target:  5'- gGGCGGCgCAguCGCAggagucgccggucgcCGGCGagcGACGGg -3'
miRNA:   3'- -CCGCCGgGUguGUGU---------------GCCGCa--CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.