miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 188985 0.69 0.750569
Target:  5'- cGCGGCCCGaGCucuGCGGCuucGACGGa -3'
miRNA:   3'- cCGCCGGGUgUGug-UGCCGca-CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 141633 0.71 0.609236
Target:  5'- uGGCGGCUCgGCgACGgAgGGCGgUGGCGGu -3'
miRNA:   3'- -CCGCCGGG-UG-UGUgUgCCGC-ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 184198 0.77 0.334619
Target:  5'- cGGcCGGUCCGauacaugcccaccCGCACGCGGCGUGugGc -3'
miRNA:   3'- -CC-GCCGGGU-------------GUGUGUGCCGCACugCc -5'
15878 5' -59.4 NC_004065.1 + 209566 0.69 0.750569
Target:  5'- aGGCccGGCCgGCuGCugGCgGGCGUG-CGGu -3'
miRNA:   3'- -CCG--CCGGgUG-UGugUG-CCGCACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 105848 0.78 0.301347
Target:  5'- cGGCGGCCUGCGCGCAcacccuggaguCGGUGuUGACGc -3'
miRNA:   3'- -CCGCCGGGUGUGUGU-----------GCCGC-ACUGCc -5'
15878 5' -59.4 NC_004065.1 + 168162 0.67 0.834952
Target:  5'- aGCaGGCCCuucCGCGCGgGGCGcGACa- -3'
miRNA:   3'- cCG-CCGGGu--GUGUGUgCCGCaCUGcc -5'
15878 5' -59.4 NC_004065.1 + 130058 0.75 0.40328
Target:  5'- cGCGGCCCgaGCACGcCGCGGCG-GugGu -3'
miRNA:   3'- cCGCCGGG--UGUGU-GUGCCGCaCugCc -5'
15878 5' -59.4 NC_004065.1 + 186549 0.67 0.82713
Target:  5'- cGGCGGCgCCGaggACACgugcuGCGGCG-GAUGa -3'
miRNA:   3'- -CCGCCG-GGUg--UGUG-----UGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 106341 0.68 0.819154
Target:  5'- gGGCGGCCCgGCGCugcuGCACGGgcagcgcgccaCGUG-CGa -3'
miRNA:   3'- -CCGCCGGG-UGUG----UGUGCC-----------GCACuGCc -5'
15878 5' -59.4 NC_004065.1 + 15425 0.68 0.797736
Target:  5'- cGGuCGGCUCAauUACACgggagGCGGCuuuuaucuggaagccGUGACGGa -3'
miRNA:   3'- -CC-GCCGGGU--GUGUG-----UGCCG---------------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 130475 0.68 0.785829
Target:  5'- -aCGGCCgucCGC-CGCGGCGaGACGGg -3'
miRNA:   3'- ccGCCGGgu-GUGuGUGCCGCaCUGCC- -5'
15878 5' -59.4 NC_004065.1 + 171702 0.68 0.777177
Target:  5'- aGCuGGCCUGCACGC-UGcGCGUcauGACGGa -3'
miRNA:   3'- cCG-CCGGGUGUGUGuGC-CGCA---CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 123022 0.69 0.760432
Target:  5'- uGGCGGCCacguacucgucagggAUGCACGCGGCGaGcAUGGc -3'
miRNA:   3'- -CCGCCGGg--------------UGUGUGUGCCGCaC-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 129898 0.69 0.741508
Target:  5'- cGGCGGaCCCugAU-CGgGGCcUGGCGGc -3'
miRNA:   3'- -CCGCC-GGGugUGuGUgCCGcACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 108788 0.69 0.723141
Target:  5'- uGGCGGCgUCGa--ACcUGGCGUGGCGGc -3'
miRNA:   3'- -CCGCCG-GGUgugUGuGCCGCACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 138821 0.7 0.694153
Target:  5'- cGGCGGCgccgaugCCGCGCACgccgACGGCGcuuccGCGGc -3'
miRNA:   3'- -CCGCCG-------GGUGUGUG----UGCCGCac---UGCC- -5'
15878 5' -59.4 NC_004065.1 + 78495 0.71 0.651354
Target:  5'- uGCGGCCCuugccgccguccaggGCGCGgAUGGCGaUGuCGGa -3'
miRNA:   3'- cCGCCGGG---------------UGUGUgUGCCGC-ACuGCC- -5'
15878 5' -59.4 NC_004065.1 + 51920 0.72 0.590154
Target:  5'- aGCGGCCUGCAC-CGCagguacucaGGCaGUGugGGa -3'
miRNA:   3'- cCGCCGGGUGUGuGUG---------CCG-CACugCC- -5'
15878 5' -59.4 NC_004065.1 + 122222 0.72 0.561747
Target:  5'- uGGUGGCCCGCucGCcCACGGCcaaguauccgGGCGGc -3'
miRNA:   3'- -CCGCCGGGUG--UGuGUGCCGca--------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 195578 0.73 0.524491
Target:  5'- uGCGuGCCCACGCu--CGG-GUGACGGc -3'
miRNA:   3'- cCGC-CGGGUGUGuguGCCgCACUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.