miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15878 5' -59.4 NC_004065.1 + 123022 0.69 0.760432
Target:  5'- uGGCGGCCacguacucgucagggAUGCACGCGGCGaGcAUGGc -3'
miRNA:   3'- -CCGCCGGg--------------UGUGUGUGCCGCaC-UGCC- -5'
15878 5' -59.4 NC_004065.1 + 162902 0.68 0.777177
Target:  5'- aGGCGcGCgCCGCuguccaGCACGGCGUccagcGACGu -3'
miRNA:   3'- -CCGC-CG-GGUGug----UGUGCCGCA-----CUGCc -5'
15878 5' -59.4 NC_004065.1 + 119188 0.75 0.411351
Target:  5'- gGGCGGCCCGCGCcccGCACuGGUGccUGGCa- -3'
miRNA:   3'- -CCGCCGGGUGUG---UGUG-CCGC--ACUGcc -5'
15878 5' -59.4 NC_004065.1 + 105547 0.73 0.533724
Target:  5'- cGCGGCCCuggacccgGCGCagcgGCACGGCGcgccgucGGCGGg -3'
miRNA:   3'- cCGCCGGG--------UGUG----UGUGCCGCa------CUGCC- -5'
15878 5' -59.4 NC_004065.1 + 151365 0.72 0.579703
Target:  5'- cGCGGCgCCggccgcuGCGCugGCGGCcgaucucuuggGUGGCGGa -3'
miRNA:   3'- cCGCCG-GG-------UGUGugUGCCG-----------CACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 78858 0.72 0.590154
Target:  5'- gGGCGGCCgGCGCGCcagcucGCGGuCGccGACGa -3'
miRNA:   3'- -CCGCCGGgUGUGUG------UGCC-GCa-CUGCc -5'
15878 5' -59.4 NC_004065.1 + 118041 0.71 0.65709
Target:  5'- aGGCGGCCCccucgaGCGCcuucauCGCGGCcgGUGACu- -3'
miRNA:   3'- -CCGCCGGG------UGUGu-----GUGCCG--CACUGcc -5'
15878 5' -59.4 NC_004065.1 + 103779 0.7 0.7045
Target:  5'- gGGCGGCUCGaucccCGCACGgGCGUGAa-- -3'
miRNA:   3'- -CCGCCGGGUgu---GUGUGC-CGCACUgcc -5'
15878 5' -59.4 NC_004065.1 + 102028 0.69 0.731444
Target:  5'- cGGCGGgCCACcucggugACcCGCGGCGgccgGGCGu -3'
miRNA:   3'- -CCGCCgGGUG-------UGuGUGCCGCa---CUGCc -5'
15878 5' -59.4 NC_004065.1 + 146872 0.69 0.741508
Target:  5'- cGGCGcGUgaACGCGgGCGGCaGUGACGa -3'
miRNA:   3'- -CCGC-CGggUGUGUgUGCCG-CACUGCc -5'
15878 5' -59.4 NC_004065.1 + 1 0.66 0.884865
Target:  5'- --gGGCCCGCGCGCacucagACGGCcggGGgGGa -3'
miRNA:   3'- ccgCCGGGUGUGUG------UGCCGca-CUgCC- -5'
15878 5' -59.4 NC_004065.1 + 104126 0.66 0.878288
Target:  5'- cGGCcgGGCCUACA-GCACGGCG-GAg-- -3'
miRNA:   3'- -CCG--CCGGGUGUgUGUGCCGCaCUgcc -5'
15878 5' -59.4 NC_004065.1 + 187391 0.68 0.79436
Target:  5'- aGCuGGCgCGCG-GCGCGGUGUGGCGu -3'
miRNA:   3'- cCG-CCGgGUGUgUGUGCCGCACUGCc -5'
15878 5' -59.4 NC_004065.1 + 105372 0.68 0.802762
Target:  5'- cGGCGGaCCCGgacuCGCugACGGCc-GGCGa -3'
miRNA:   3'- -CCGCC-GGGU----GUGugUGCCGcaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 186549 0.67 0.82713
Target:  5'- cGGCGGCgCCGaggACACgugcuGCGGCG-GAUGa -3'
miRNA:   3'- -CCGCCG-GGUg--UGUG-----UGCCGCaCUGCc -5'
15878 5' -59.4 NC_004065.1 + 168162 0.67 0.834952
Target:  5'- aGCaGGCCCuucCGCGCGgGGCGcGACa- -3'
miRNA:   3'- cCG-CCGGGu--GUGUGUgCCGCaCUGcc -5'
15878 5' -59.4 NC_004065.1 + 136635 0.67 0.842611
Target:  5'- cGGCGGUCCGgA---GCGGCGUGGauccUGGu -3'
miRNA:   3'- -CCGCCGGGUgUgugUGCCGCACU----GCC- -5'
15878 5' -59.4 NC_004065.1 + 97933 0.67 0.857422
Target:  5'- cGCGcGUCCG-GCAC-CGGCGUGGCa- -3'
miRNA:   3'- cCGC-CGGGUgUGUGuGCCGCACUGcc -5'
15878 5' -59.4 NC_004065.1 + 166524 0.67 0.864562
Target:  5'- gGGCGaGgCCAUccgcaccuggcuGCGCgACGGCGccUGGCGGc -3'
miRNA:   3'- -CCGC-CgGGUG------------UGUG-UGCCGC--ACUGCC- -5'
15878 5' -59.4 NC_004065.1 + 26451 0.66 0.871519
Target:  5'- uGCGGUaCGCAUACACguuGGUGgucGACGGc -3'
miRNA:   3'- cCGCCGgGUGUGUGUG---CCGCa--CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.