miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1588 3' -59.2 NC_001347.2 + 157991 0.66 0.879255
Target:  5'- --gCGgaggagGCUCGaCGgcGGCAGCuGCGGCGg -3'
miRNA:   3'- guaGCa-----CGAGUaGC--CCGUCG-CGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 142409 0.66 0.86531
Target:  5'- uGUCGgcGCUCuUCGcgcccaguGGCgucGGCGCGGCGu -3'
miRNA:   3'- gUAGCa-CGAGuAGC--------CCG---UCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 118244 0.66 0.86531
Target:  5'- --aCGcGCUCG--GGGCAGCGCaGCa -3'
miRNA:   3'- guaGCaCGAGUagCCCGUCGCGcCGc -5'
1588 3' -59.2 NC_001347.2 + 150584 0.66 0.858049
Target:  5'- gCGUCG-GCUCcggcaguaGuGGCGGCGuCGGCGu -3'
miRNA:   3'- -GUAGCaCGAGuag-----C-CCGUCGC-GCCGC- -5'
1588 3' -59.2 NC_001347.2 + 36666 0.66 0.858049
Target:  5'- gCGUCGgaGCUCAgacCGGGCuccGGCG-GGUGg -3'
miRNA:   3'- -GUAGCa-CGAGUa--GCCCG---UCGCgCCGC- -5'
1588 3' -59.2 NC_001347.2 + 158349 0.66 0.850601
Target:  5'- -cUCGcucUGCggCAgucagCGGGUGGUGCGGCa -3'
miRNA:   3'- guAGC---ACGa-GUa----GCCCGUCGCGCCGc -5'
1588 3' -59.2 NC_001347.2 + 126006 0.67 0.835172
Target:  5'- ---aGUGCUCGgacUCGcGGCGG-GUGGCGc -3'
miRNA:   3'- guagCACGAGU---AGC-CCGUCgCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 166042 0.67 0.835172
Target:  5'- -uUCGUGaucggUGUCGGGCgucaugcggAGuCGCGGCGg -3'
miRNA:   3'- guAGCACga---GUAGCCCG---------UC-GCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 8590 0.67 0.835172
Target:  5'- -uUgGUGCUcCAUUGGGUgcccgucacgcaGGCGCuGGCGu -3'
miRNA:   3'- guAgCACGA-GUAGCCCG------------UCGCG-CCGC- -5'
1588 3' -59.2 NC_001347.2 + 191010 0.67 0.827201
Target:  5'- -uUCGUcCUCGcCGGGUAGCGCuGCc -3'
miRNA:   3'- guAGCAcGAGUaGCCCGUCGCGcCGc -5'
1588 3' -59.2 NC_001347.2 + 8758 0.67 0.810784
Target:  5'- uCAUUGuUGuCUCGUCGGGUuucCGaCGGCGg -3'
miRNA:   3'- -GUAGC-AC-GAGUAGCCCGuc-GC-GCCGC- -5'
1588 3' -59.2 NC_001347.2 + 112000 0.67 0.80235
Target:  5'- --gCG-GCggcUUGGGCAGCaGCGGCGg -3'
miRNA:   3'- guaGCaCGaguAGCCCGUCG-CGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 109543 0.67 0.80235
Target:  5'- --gCGUGCaCGUCGGGCGuuaugacaCGCGGCc -3'
miRNA:   3'- guaGCACGaGUAGCCCGUc-------GCGCCGc -5'
1588 3' -59.2 NC_001347.2 + 166397 0.67 0.793776
Target:  5'- ----uUGCUCAUCuGGGCcaccGUGCGGUGa -3'
miRNA:   3'- guagcACGAGUAG-CCCGu---CGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 208702 0.67 0.793776
Target:  5'- gGUCGUGCaCGUCGGccacCAGCGCcGUGg -3'
miRNA:   3'- gUAGCACGaGUAGCCc---GUCGCGcCGC- -5'
1588 3' -59.2 NC_001347.2 + 158722 0.68 0.785069
Target:  5'- aCAUUGUGCag--CaGGC-GCGCGGCGg -3'
miRNA:   3'- -GUAGCACGaguaGcCCGuCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 184485 0.68 0.785069
Target:  5'- uCAUCG-GC-C-UCGGGCGGCcCGGCc -3'
miRNA:   3'- -GUAGCaCGaGuAGCCCGUCGcGCCGc -5'
1588 3' -59.2 NC_001347.2 + 228061 0.68 0.784192
Target:  5'- aCGUCGUggcgaggggauggGUUUAUUGGauaucggugaaGCAGCGUGGCGg -3'
miRNA:   3'- -GUAGCA-------------CGAGUAGCC-----------CGUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 149010 0.68 0.776238
Target:  5'- gUAUC-UGCgUCAacguuuUCGGGCAGCGCaGCu -3'
miRNA:   3'- -GUAGcACG-AGU------AGCCCGUCGCGcCGc -5'
1588 3' -59.2 NC_001347.2 + 86799 0.68 0.773565
Target:  5'- -uUCGUGCagCAuggucugcgagcauUCGGGUAGaaGCGGCGa -3'
miRNA:   3'- guAGCACGa-GU--------------AGCCCGUCg-CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.