Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1588 | 3' | -59.2 | NC_001347.2 | + | 82811 | 0.68 | 0.738887 |
Target: 5'- --aCGUGCUCAaaccgcgUCGuG-AGCGCGGCGg -3' miRNA: 3'- guaGCACGAGU-------AGCcCgUCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 194044 | 0.68 | 0.767289 |
Target: 5'- -uUCGUGCgCGUgGGGCuGGCGCuGCu -3' miRNA: 3'- guAGCACGaGUAgCCCG-UCGCGcCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 86799 | 0.68 | 0.773565 |
Target: 5'- -uUCGUGCagCAuggucugcgagcauUCGGGUAGaaGCGGCGa -3' miRNA: 3'- guAGCACGa-GU--------------AGCCCGUCg-CGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 149010 | 0.68 | 0.776238 |
Target: 5'- gUAUC-UGCgUCAacguuuUCGGGCAGCGCaGCu -3' miRNA: 3'- -GUAGcACG-AGU------AGCCCGUCGCGcCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 228061 | 0.68 | 0.784192 |
Target: 5'- aCGUCGUggcgaggggauggGUUUAUUGGauaucggugaaGCAGCGUGGCGg -3' miRNA: 3'- -GUAGCA-------------CGAGUAGCC-----------CGUCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 158722 | 0.68 | 0.785069 |
Target: 5'- aCAUUGUGCag--CaGGC-GCGCGGCGg -3' miRNA: 3'- -GUAGCACGaguaGcCCGuCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 126006 | 0.67 | 0.835172 |
Target: 5'- ---aGUGCUCGgacUCGcGGCGG-GUGGCGc -3' miRNA: 3'- guagCACGAGU---AGC-CCGUCgCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 166042 | 0.67 | 0.835172 |
Target: 5'- -uUCGUGaucggUGUCGGGCgucaugcggAGuCGCGGCGg -3' miRNA: 3'- guAGCACga---GUAGCCCG---------UC-GCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 191010 | 0.67 | 0.827201 |
Target: 5'- -uUCGUcCUCGcCGGGUAGCGCuGCc -3' miRNA: 3'- guAGCAcGAGUaGCCCGUCGCGcCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 8590 | 0.67 | 0.835172 |
Target: 5'- -uUgGUGCUcCAUUGGGUgcccgucacgcaGGCGCuGGCGu -3' miRNA: 3'- guAgCACGA-GUAGCCCG------------UCGCG-CCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 8758 | 0.67 | 0.810784 |
Target: 5'- uCAUUGuUGuCUCGUCGGGUuucCGaCGGCGg -3' miRNA: 3'- -GUAGC-AC-GAGUAGCCCGuc-GC-GCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 112000 | 0.67 | 0.80235 |
Target: 5'- --gCG-GCggcUUGGGCAGCaGCGGCGg -3' miRNA: 3'- guaGCaCGaguAGCCCGUCG-CGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 109543 | 0.67 | 0.80235 |
Target: 5'- --gCGUGCaCGUCGGGCGuuaugacaCGCGGCc -3' miRNA: 3'- guaGCACGaGUAGCCCGUc-------GCGCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 166397 | 0.67 | 0.793776 |
Target: 5'- ----uUGCUCAUCuGGGCcaccGUGCGGUGa -3' miRNA: 3'- guagcACGAGUAG-CCCGu---CGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 208702 | 0.67 | 0.793776 |
Target: 5'- gGUCGUGCaCGUCGGccacCAGCGCcGUGg -3' miRNA: 3'- gUAGCACGaGUAGCCc---GUCGCGcCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 157991 | 0.66 | 0.879255 |
Target: 5'- --gCGgaggagGCUCGaCGgcGGCAGCuGCGGCGg -3' miRNA: 3'- guaGCa-----CGAGUaGC--CCGUCG-CGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 118244 | 0.66 | 0.86531 |
Target: 5'- --aCGcGCUCG--GGGCAGCGCaGCa -3' miRNA: 3'- guaGCaCGAGUagCCCGUCGCGcCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 150584 | 0.66 | 0.858049 |
Target: 5'- gCGUCG-GCUCcggcaguaGuGGCGGCGuCGGCGu -3' miRNA: 3'- -GUAGCaCGAGuag-----C-CCGUCGC-GCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 36666 | 0.66 | 0.858049 |
Target: 5'- gCGUCGgaGCUCAgacCGGGCuccGGCG-GGUGg -3' miRNA: 3'- -GUAGCa-CGAGUa--GCCCG---UCGCgCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 158349 | 0.66 | 0.850601 |
Target: 5'- -cUCGcucUGCggCAgucagCGGGUGGUGCGGCa -3' miRNA: 3'- guAGC---ACGa-GUa----GCCCGUCGCGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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