Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1588 | 3' | -59.2 | NC_001347.2 | + | 37913 | 0.68 | 0.767289 |
Target: 5'- --cCGUGCggcUCGGcGCccacAGCGCGGCGc -3' miRNA: 3'- guaGCACGaguAGCC-CG----UCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 194044 | 0.68 | 0.767289 |
Target: 5'- -uUCGUGCgCGUgGGGCuGGCGCuGCu -3' miRNA: 3'- guAGCACGaGUAgCCCG-UCGCGcCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 147899 | 0.68 | 0.739817 |
Target: 5'- cCAUUGggGC-CGU-GGGUGGCGCGGUGg -3' miRNA: 3'- -GUAGCa-CGaGUAgCCCGUCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 82811 | 0.68 | 0.738887 |
Target: 5'- --aCGUGCUCAaaccgcgUCGuG-AGCGCGGCGg -3' miRNA: 3'- guaGCACGAGU-------AGCcCgUCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 184941 | 0.69 | 0.721061 |
Target: 5'- cCGUCugcaGCUCGUCGGcCGGCGUGGgCGg -3' miRNA: 3'- -GUAGca--CGAGUAGCCcGUCGCGCC-GC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 102400 | 0.69 | 0.702028 |
Target: 5'- uGUCGUuuUCAgcaggaacccaUGGGCGGUGCGGCGc -3' miRNA: 3'- gUAGCAcgAGUa----------GCCCGUCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 29134 | 0.69 | 0.702028 |
Target: 5'- --gCGUGCUCcgAUCGGGCGGuCGacuggaGGCu -3' miRNA: 3'- guaGCACGAG--UAGCCCGUC-GCg-----CCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 5547 | 0.69 | 0.692427 |
Target: 5'- --gCGUGCUCGUaucccGGCAaguuGCGCGGUGg -3' miRNA: 3'- guaGCACGAGUAgc---CCGU----CGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 229640 | 0.7 | 0.643889 |
Target: 5'- uGUCGUGCcgggugugUCG-CGGGC-GUGUGGCGg -3' miRNA: 3'- gUAGCACG--------AGUaGCCCGuCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 161 | 0.7 | 0.643889 |
Target: 5'- uGUCGUGCcgggugugUCG-CGGGC-GUGUGGCGg -3' miRNA: 3'- gUAGCACG--------AGUaGCCCGuCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 231 | 0.7 | 0.634127 |
Target: 5'- --gUGUGCgcggCcUCGGGguGUGCGGCu -3' miRNA: 3'- guaGCACGa---GuAGCCCguCGCGCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 229710 | 0.7 | 0.634127 |
Target: 5'- --gUGUGCgcggCcUCGGGguGUGCGGCu -3' miRNA: 3'- guaGCACGa---GuAGCCCguCGCGCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 36363 | 0.7 | 0.634127 |
Target: 5'- --gCGUGUUCAgUUGGGCGGCaGgGGCa -3' miRNA: 3'- guaGCACGAGU-AGCCCGUCG-CgCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 79737 | 0.7 | 0.634127 |
Target: 5'- -uUCGUGCUCuUCcaGCAGaCGCGGCa -3' miRNA: 3'- guAGCACGAGuAGccCGUC-GCGCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 39073 | 0.71 | 0.585429 |
Target: 5'- cCGUCGcGCccacgccguUCAUCuGGCuGCGCGGCGu -3' miRNA: 3'- -GUAGCaCG---------AGUAGcCCGuCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 99574 | 0.71 | 0.566121 |
Target: 5'- --cCGcGCUCGUCGucGGgAGCGCGGUGg -3' miRNA: 3'- guaGCaCGAGUAGC--CCgUCGCGCCGC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 31674 | 0.71 | 0.566121 |
Target: 5'- gGUCG-GCUgGUCGGGCcGuCGCGGaCGa -3' miRNA: 3'- gUAGCaCGAgUAGCCCGuC-GCGCC-GC- -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 139667 | 0.72 | 0.537487 |
Target: 5'- --gUGUGCUgAUCGaGGCGGCguuGCGGCa -3' miRNA: 3'- guaGCACGAgUAGC-CCGUCG---CGCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 97898 | 0.72 | 0.518677 |
Target: 5'- aCGUCGUcuucggCGUCGGGCGGCGgCGGUa -3' miRNA: 3'- -GUAGCAcga---GUAGCCCGUCGC-GCCGc -5' |
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1588 | 3' | -59.2 | NC_001347.2 | + | 153211 | 0.73 | 0.490972 |
Target: 5'- uGUCGUGCagGUCGuGCAGCGUgaGGCGc -3' miRNA: 3'- gUAGCACGagUAGCcCGUCGCG--CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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