miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1588 3' -59.2 NC_001347.2 + 161 0.7 0.643889
Target:  5'- uGUCGUGCcgggugugUCG-CGGGC-GUGUGGCGg -3'
miRNA:   3'- gUAGCACG--------AGUaGCCCGuCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 231 0.7 0.634127
Target:  5'- --gUGUGCgcggCcUCGGGguGUGCGGCu -3'
miRNA:   3'- guaGCACGa---GuAGCCCguCGCGCCGc -5'
1588 3' -59.2 NC_001347.2 + 5547 0.69 0.692427
Target:  5'- --gCGUGCUCGUaucccGGCAaguuGCGCGGUGg -3'
miRNA:   3'- guaGCACGAGUAgc---CCGU----CGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 8590 0.67 0.835172
Target:  5'- -uUgGUGCUcCAUUGGGUgcccgucacgcaGGCGCuGGCGu -3'
miRNA:   3'- guAgCACGA-GUAGCCCG------------UCGCG-CCGC- -5'
1588 3' -59.2 NC_001347.2 + 8758 0.67 0.810784
Target:  5'- uCAUUGuUGuCUCGUCGGGUuucCGaCGGCGg -3'
miRNA:   3'- -GUAGC-AC-GAGUAGCCCGuc-GC-GCCGC- -5'
1588 3' -59.2 NC_001347.2 + 29134 0.69 0.702028
Target:  5'- --gCGUGCUCcgAUCGGGCGGuCGacuggaGGCu -3'
miRNA:   3'- guaGCACGAG--UAGCCCGUC-GCg-----CCGc -5'
1588 3' -59.2 NC_001347.2 + 31674 0.71 0.566121
Target:  5'- gGUCG-GCUgGUCGGGCcGuCGCGGaCGa -3'
miRNA:   3'- gUAGCaCGAgUAGCCCGuC-GCGCC-GC- -5'
1588 3' -59.2 NC_001347.2 + 36363 0.7 0.634127
Target:  5'- --gCGUGUUCAgUUGGGCGGCaGgGGCa -3'
miRNA:   3'- guaGCACGAGU-AGCCCGUCG-CgCCGc -5'
1588 3' -59.2 NC_001347.2 + 36666 0.66 0.858049
Target:  5'- gCGUCGgaGCUCAgacCGGGCuccGGCG-GGUGg -3'
miRNA:   3'- -GUAGCa-CGAGUa--GCCCG---UCGCgCCGC- -5'
1588 3' -59.2 NC_001347.2 + 37913 0.68 0.767289
Target:  5'- --cCGUGCggcUCGGcGCccacAGCGCGGCGc -3'
miRNA:   3'- guaGCACGaguAGCC-CG----UCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 39073 0.71 0.585429
Target:  5'- cCGUCGcGCccacgccguUCAUCuGGCuGCGCGGCGu -3'
miRNA:   3'- -GUAGCaCG---------AGUAGcCCGuCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 79737 0.7 0.634127
Target:  5'- -uUCGUGCUCuUCcaGCAGaCGCGGCa -3'
miRNA:   3'- guAGCACGAGuAGccCGUC-GCGCCGc -5'
1588 3' -59.2 NC_001347.2 + 82811 0.68 0.738887
Target:  5'- --aCGUGCUCAaaccgcgUCGuG-AGCGCGGCGg -3'
miRNA:   3'- guaGCACGAGU-------AGCcCgUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 86799 0.68 0.773565
Target:  5'- -uUCGUGCagCAuggucugcgagcauUCGGGUAGaaGCGGCGa -3'
miRNA:   3'- guAGCACGa-GU--------------AGCCCGUCg-CGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 97898 0.72 0.518677
Target:  5'- aCGUCGUcuucggCGUCGGGCGGCGgCGGUa -3'
miRNA:   3'- -GUAGCAcga---GUAGCCCGUCGC-GCCGc -5'
1588 3' -59.2 NC_001347.2 + 99574 0.71 0.566121
Target:  5'- --cCGcGCUCGUCGucGGgAGCGCGGUGg -3'
miRNA:   3'- guaGCaCGAGUAGC--CCgUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 102400 0.69 0.702028
Target:  5'- uGUCGUuuUCAgcaggaacccaUGGGCGGUGCGGCGc -3'
miRNA:   3'- gUAGCAcgAGUa----------GCCCGUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 109543 0.67 0.80235
Target:  5'- --gCGUGCaCGUCGGGCGuuaugacaCGCGGCc -3'
miRNA:   3'- guaGCACGaGUAGCCCGUc-------GCGCCGc -5'
1588 3' -59.2 NC_001347.2 + 112000 0.67 0.80235
Target:  5'- --gCG-GCggcUUGGGCAGCaGCGGCGg -3'
miRNA:   3'- guaGCaCGaguAGCCCGUCG-CGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 118244 0.66 0.86531
Target:  5'- --aCGcGCUCG--GGGCAGCGCaGCa -3'
miRNA:   3'- guaGCaCGAGUagCCCGUCGCGcCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.