miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1588 3' -59.2 NC_001347.2 + 126006 0.67 0.835172
Target:  5'- ---aGUGCUCGgacUCGcGGCGG-GUGGCGc -3'
miRNA:   3'- guagCACGAGU---AGC-CCGUCgCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 139667 0.72 0.537487
Target:  5'- --gUGUGCUgAUCGaGGCGGCguuGCGGCa -3'
miRNA:   3'- guaGCACGAgUAGC-CCGUCG---CGCCGc -5'
1588 3' -59.2 NC_001347.2 + 142409 0.66 0.86531
Target:  5'- uGUCGgcGCUCuUCGcgcccaguGGCgucGGCGCGGCGu -3'
miRNA:   3'- gUAGCa-CGAGuAGC--------CCG---UCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 147899 0.68 0.739817
Target:  5'- cCAUUGggGC-CGU-GGGUGGCGCGGUGg -3'
miRNA:   3'- -GUAGCa-CGaGUAgCCCGUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 149010 0.68 0.776238
Target:  5'- gUAUC-UGCgUCAacguuuUCGGGCAGCGCaGCu -3'
miRNA:   3'- -GUAGcACG-AGU------AGCCCGUCGCGcCGc -5'
1588 3' -59.2 NC_001347.2 + 150584 0.66 0.858049
Target:  5'- gCGUCG-GCUCcggcaguaGuGGCGGCGuCGGCGu -3'
miRNA:   3'- -GUAGCaCGAGuag-----C-CCGUCGC-GCCGC- -5'
1588 3' -59.2 NC_001347.2 + 153211 0.73 0.490972
Target:  5'- uGUCGUGCagGUCGuGCAGCGUgaGGCGc -3'
miRNA:   3'- gUAGCACGagUAGCcCGUCGCG--CCGC- -5'
1588 3' -59.2 NC_001347.2 + 157991 0.66 0.879255
Target:  5'- --gCGgaggagGCUCGaCGgcGGCAGCuGCGGCGg -3'
miRNA:   3'- guaGCa-----CGAGUaGC--CCGUCG-CGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 158349 0.66 0.850601
Target:  5'- -cUCGcucUGCggCAgucagCGGGUGGUGCGGCa -3'
miRNA:   3'- guAGC---ACGa-GUa----GCCCGUCGCGCCGc -5'
1588 3' -59.2 NC_001347.2 + 158722 0.68 0.785069
Target:  5'- aCAUUGUGCag--CaGGC-GCGCGGCGg -3'
miRNA:   3'- -GUAGCACGaguaGcCCGuCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 166042 0.67 0.835172
Target:  5'- -uUCGUGaucggUGUCGGGCgucaugcggAGuCGCGGCGg -3'
miRNA:   3'- guAGCACga---GUAGCCCG---------UC-GCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 166397 0.67 0.793776
Target:  5'- ----uUGCUCAUCuGGGCcaccGUGCGGUGa -3'
miRNA:   3'- guagcACGAGUAG-CCCGu---CGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 180709 1.08 0.002493
Target:  5'- uCAUCGUGCUCAUCGGGCAGCGCGGCGg -3'
miRNA:   3'- -GUAGCACGAGUAGCCCGUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 184485 0.68 0.785069
Target:  5'- uCAUCG-GC-C-UCGGGCGGCcCGGCc -3'
miRNA:   3'- -GUAGCaCGaGuAGCCCGUCGcGCCGc -5'
1588 3' -59.2 NC_001347.2 + 184941 0.69 0.721061
Target:  5'- cCGUCugcaGCUCGUCGGcCGGCGUGGgCGg -3'
miRNA:   3'- -GUAGca--CGAGUAGCCcGUCGCGCC-GC- -5'
1588 3' -59.2 NC_001347.2 + 191010 0.67 0.827201
Target:  5'- -uUCGUcCUCGcCGGGUAGCGCuGCc -3'
miRNA:   3'- guAGCAcGAGUaGCCCGUCGCGcCGc -5'
1588 3' -59.2 NC_001347.2 + 194044 0.68 0.767289
Target:  5'- -uUCGUGCgCGUgGGGCuGGCGCuGCu -3'
miRNA:   3'- guAGCACGaGUAgCCCG-UCGCGcCGc -5'
1588 3' -59.2 NC_001347.2 + 208702 0.67 0.793776
Target:  5'- gGUCGUGCaCGUCGGccacCAGCGCcGUGg -3'
miRNA:   3'- gUAGCACGaGUAGCCc---GUCGCGcCGC- -5'
1588 3' -59.2 NC_001347.2 + 228061 0.68 0.784192
Target:  5'- aCGUCGUggcgaggggauggGUUUAUUGGauaucggugaaGCAGCGUGGCGg -3'
miRNA:   3'- -GUAGCA-------------CGAGUAGCC-----------CGUCGCGCCGC- -5'
1588 3' -59.2 NC_001347.2 + 229640 0.7 0.643889
Target:  5'- uGUCGUGCcgggugugUCG-CGGGC-GUGUGGCGg -3'
miRNA:   3'- gUAGCACG--------AGUaGCCCGuCGCGCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.