miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1588 5' -55.6 NC_001347.2 + 228900 0.66 0.956162
Target:  5'- gUugGcgGGCCUGUGCGcaagcagcguagucuGCgGCGUCg- -3'
miRNA:   3'- -AugCuaCUGGACGCGC---------------UGaCGCAGau -5'
1588 5' -55.6 NC_001347.2 + 175788 0.66 0.94645
Target:  5'- cUACGAccUGGCCUGUG-GugUGUGUUg- -3'
miRNA:   3'- -AUGCU--ACUGGACGCgCugACGCAGau -5'
1588 5' -55.6 NC_001347.2 + 166415 0.66 0.939243
Target:  5'- gUGCGGUGACCcuugGCGUGucggcuuacuuccuCUGUGUCg- -3'
miRNA:   3'- -AUGCUACUGGa---CGCGCu-------------GACGCAGau -5'
1588 5' -55.6 NC_001347.2 + 54703 0.66 0.937349
Target:  5'- -uUGGUGACUUGgGCGAUucugUGUGUCg- -3'
miRNA:   3'- auGCUACUGGACgCGCUG----ACGCAGau -5'
1588 5' -55.6 NC_001347.2 + 170599 0.66 0.937349
Target:  5'- gUGCGAUGAgUCgGUGCGccguuuuguGCUGCGUCa- -3'
miRNA:   3'- -AUGCUACU-GGaCGCGC---------UGACGCAGau -5'
1588 5' -55.6 NC_001347.2 + 127403 0.67 0.932449
Target:  5'- -cCGAcuuUGAUuuacggCUGCGCGACgGCGUCUc -3'
miRNA:   3'- auGCU---ACUG------GACGCGCUGaCGCAGAu -5'
1588 5' -55.6 NC_001347.2 + 66699 0.67 0.904441
Target:  5'- gACGAUGcaGCCUGcCGcCGGCUGUuUCUAc -3'
miRNA:   3'- aUGCUAC--UGGAC-GC-GCUGACGcAGAU- -5'
1588 5' -55.6 NC_001347.2 + 199112 0.7 0.779276
Target:  5'- aACGGcucugguuguUGACCUGCGCGGCUacccggcguaccGUGUCg- -3'
miRNA:   3'- aUGCU----------ACUGGACGCGCUGA------------CGCAGau -5'
1588 5' -55.6 NC_001347.2 + 164207 0.71 0.760649
Target:  5'- -uCGAUGACCUGCGUcagacGCUGaaaGUCUAc -3'
miRNA:   3'- auGCUACUGGACGCGc----UGACg--CAGAU- -5'
1588 5' -55.6 NC_001347.2 + 88615 0.71 0.751164
Target:  5'- gGCGgcGGCCUGCGCGGcCUGCa---- -3'
miRNA:   3'- aUGCuaCUGGACGCGCU-GACGcagau -5'
1588 5' -55.6 NC_001347.2 + 180746 1.05 0.00801
Target:  5'- cUACGAUGACCUGCGCGACUGCGUCUAc -3'
miRNA:   3'- -AUGCUACUGGACGCGCUGACGCAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.