miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 3' -57.3 NC_004065.1 + 23627 0.66 0.937282
Target:  5'- -gGGUGGACGGGCgGCUggCCUCgggCCGa -3'
miRNA:   3'- agUCGUCUGCCUG-CGA--GGAGacaGGC- -5'
15880 3' -57.3 NC_004065.1 + 61567 0.66 0.932526
Target:  5'- -aGGgGGACGG-CGUUCCUCUuGgacgCCGu -3'
miRNA:   3'- agUCgUCUGCCuGCGAGGAGA-Ca---GGC- -5'
15880 3' -57.3 NC_004065.1 + 186654 0.66 0.932526
Target:  5'- cUCGGCGGGaaGGCGCUCCaccagcagaUCUGUaaGa -3'
miRNA:   3'- -AGUCGUCUgcCUGCGAGG---------AGACAggC- -5'
15880 3' -57.3 NC_004065.1 + 51065 0.66 0.932526
Target:  5'- aCAGUagAGAUGGACaGUUCUaUCUGUCUa -3'
miRNA:   3'- aGUCG--UCUGCCUG-CGAGG-AGACAGGc -5'
15880 3' -57.3 NC_004065.1 + 86856 0.66 0.932526
Target:  5'- cUCGGCGGACaGGAUGaagUCCUCgucGUCa- -3'
miRNA:   3'- -AGUCGUCUG-CCUGCg--AGGAGa--CAGgc -5'
15880 3' -57.3 NC_004065.1 + 54508 0.66 0.927551
Target:  5'- gCGGCGuuacucuuucGGCGGACGCg-UUCUGUCUa -3'
miRNA:   3'- aGUCGU----------CUGCCUGCGagGAGACAGGc -5'
15880 3' -57.3 NC_004065.1 + 127601 0.66 0.927551
Target:  5'- --cGCAGAgGGGaggcgccgGCUCCUCccGUCCGu -3'
miRNA:   3'- aguCGUCUgCCUg-------CGAGGAGa-CAGGC- -5'
15880 3' -57.3 NC_004065.1 + 155363 0.66 0.927551
Target:  5'- --cGCuacGGCGGACGCgCCgcgGUCCGg -3'
miRNA:   3'- aguCGu--CUGCCUGCGaGGagaCAGGC- -5'
15880 3' -57.3 NC_004065.1 + 90993 0.66 0.927041
Target:  5'- -uGGCGGACGGACuGCagcgUCUUCUugacgcgGUCCa -3'
miRNA:   3'- agUCGUCUGCCUG-CG----AGGAGA-------CAGGc -5'
15880 3' -57.3 NC_004065.1 + 214226 0.66 0.916936
Target:  5'- gUAGaCGGGCgGGACGCUCUUCUucUCCc -3'
miRNA:   3'- aGUC-GUCUG-CCUGCGAGGAGAc-AGGc -5'
15880 3' -57.3 NC_004065.1 + 64356 0.66 0.916382
Target:  5'- -uGGCAGAuccucuCGGAuCGCgUCCugcaggcUCUGUCCGa -3'
miRNA:   3'- agUCGUCU------GCCU-GCG-AGG-------AGACAGGC- -5'
15880 3' -57.3 NC_004065.1 + 120387 0.67 0.911299
Target:  5'- cCGGCggaucGGGCGGACGCUgCUCcuucgCCGc -3'
miRNA:   3'- aGUCG-----UCUGCCUGCGAgGAGaca--GGC- -5'
15880 3' -57.3 NC_004065.1 + 110548 0.67 0.911299
Target:  5'- cUCGGUgaAGGUGGACGCUUCggCgGUCCGc -3'
miRNA:   3'- -AGUCG--UCUGCCUGCGAGGa-GaCAGGC- -5'
15880 3' -57.3 NC_004065.1 + 82140 0.67 0.910145
Target:  5'- cCGGCGGcGCGGACGCUguaCCUcCUGgcgaggcaccagCCGa -3'
miRNA:   3'- aGUCGUC-UGCCUGCGA---GGA-GACa-----------GGC- -5'
15880 3' -57.3 NC_004065.1 + 6748 0.67 0.905443
Target:  5'- gCGGCGGcacuCGGGuCGgUCCUCgugGUCCu -3'
miRNA:   3'- aGUCGUCu---GCCU-GCgAGGAGa--CAGGc -5'
15880 3' -57.3 NC_004065.1 + 61719 0.67 0.905443
Target:  5'- gCGGCGGAUGcGagccauGCGCUCCUUggcggGUUCGg -3'
miRNA:   3'- aGUCGUCUGC-C------UGCGAGGAGa----CAGGC- -5'
15880 3' -57.3 NC_004065.1 + 165852 0.67 0.89937
Target:  5'- aCGGCGGGgcCGGACGgUCuCUCacgGUCCc -3'
miRNA:   3'- aGUCGUCU--GCCUGCgAG-GAGa--CAGGc -5'
15880 3' -57.3 NC_004065.1 + 193920 0.67 0.883927
Target:  5'- gCAGCGGccccguugccgccACGGuuguuuccacuaacGcCGCUCCUCUGUUCGu -3'
miRNA:   3'- aGUCGUC-------------UGCC--------------U-GCGAGGAGACAGGC- -5'
15880 3' -57.3 NC_004065.1 + 98264 0.67 0.879878
Target:  5'- aCGGCGGcccUGGGCGCgcgCCUCgcgGaUCCGg -3'
miRNA:   3'- aGUCGUCu--GCCUGCGa--GGAGa--C-AGGC- -5'
15880 3' -57.3 NC_004065.1 + 207388 0.67 0.879878
Target:  5'- aCAGCAGA---AUGCUCCUggGUCCGu -3'
miRNA:   3'- aGUCGUCUgccUGCGAGGAgaCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.