Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15880 | 3' | -57.3 | NC_004065.1 | + | 27601 | 0.67 | 0.879878 |
Target: 5'- aCAGCAGAgaGGugGUUgCCUCgGcUCCGc -3' miRNA: 3'- aGUCGUCUg-CCugCGA-GGAGaC-AGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 165263 | 0.68 | 0.872968 |
Target: 5'- --cGCAGGuCGGAgCGCUCCUUgg-CCGa -3' miRNA: 3'- aguCGUCU-GCCU-GCGAGGAGacaGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 201518 | 0.68 | 0.865859 |
Target: 5'- uUCAGCAgucccaugcGACGGA-GCUCCgcggcgCUGUCgGc -3' miRNA: 3'- -AGUCGU---------CUGCCUgCGAGGa-----GACAGgC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 20095 | 0.68 | 0.860767 |
Target: 5'- aCGGCAuaucgacgggaacGACGGGCGCUcugacgacccucgaaCCUCUcGUUCGg -3' miRNA: 3'- aGUCGU-------------CUGCCUGCGA---------------GGAGA-CAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 198021 | 0.68 | 0.851063 |
Target: 5'- cUCucCAGACGcuccuugcGGCGCUCuCUCUGUCUGa -3' miRNA: 3'- -AGucGUCUGC--------CUGCGAG-GAGACAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 165381 | 0.68 | 0.843386 |
Target: 5'- cCAGCAcGGCGGACGCgcggucgauggCCUuCUggaaGUCCGu -3' miRNA: 3'- aGUCGU-CUGCCUGCGa----------GGA-GA----CAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 67521 | 0.68 | 0.843386 |
Target: 5'- cUCGuGCGGAUGuucaaccuaguGGCGCUCCUC-GUCCu -3' miRNA: 3'- -AGU-CGUCUGC-----------CUGCGAGGAGaCAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 224802 | 0.68 | 0.843386 |
Target: 5'- gCGGCAGcACGGucACGaccgCCgUCUGUCCGu -3' miRNA: 3'- aGUCGUC-UGCC--UGCga--GG-AGACAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 151488 | 0.68 | 0.835533 |
Target: 5'- gCAGCGGcacGCGGACggGCUCCUCagcggUGUUCu -3' miRNA: 3'- aGUCGUC---UGCCUG--CGAGGAG-----ACAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 201492 | 0.68 | 0.835533 |
Target: 5'- gCAGCAugcGGCGGGCGCUaCUCUcGUCa- -3' miRNA: 3'- aGUCGU---CUGCCUGCGAgGAGA-CAGgc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 148465 | 0.68 | 0.834738 |
Target: 5'- aCAGCaugcagaucucggGGACGuGGCGCgugaUCCUCggGUCCGu -3' miRNA: 3'- aGUCG-------------UCUGC-CUGCG----AGGAGa-CAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 35079 | 0.69 | 0.810974 |
Target: 5'- cCAGCuggcgAGACGGGgGCUgUCUCUGUgCGa -3' miRNA: 3'- aGUCG-----UCUGCCUgCGA-GGAGACAgGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 1890 | 0.69 | 0.797311 |
Target: 5'- cUCGGCAG-CGGACGUUggaguuguaucgagaUCUCUgGUCCa -3' miRNA: 3'- -AGUCGUCuGCCUGCGA---------------GGAGA-CAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 115543 | 0.7 | 0.767146 |
Target: 5'- --uGCGGGCGGGCGagcgucugUCUCUGUCUGu -3' miRNA: 3'- aguCGUCUGCCUGCga------GGAGACAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 32859 | 0.7 | 0.758016 |
Target: 5'- cCAGCgcguuggcgauGGACaGGucGCGCUCCUC-GUCCGa -3' miRNA: 3'- aGUCG-----------UCUG-CC--UGCGAGGAGaCAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 157807 | 0.7 | 0.739455 |
Target: 5'- aUCuGCGGGCGGAUG-UCCUCcugcGUCCa -3' miRNA: 3'- -AGuCGUCUGCCUGCgAGGAGa---CAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 175386 | 0.71 | 0.730041 |
Target: 5'- gCAGCAGGCGGACGacgaUCCcccaCcGUCCu -3' miRNA: 3'- aGUCGUCUGCCUGCg---AGGa---GaCAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 133470 | 0.71 | 0.681957 |
Target: 5'- gUCGGCGGACGaGuccaGCGaCUCCUC-GUCCa -3' miRNA: 3'- -AGUCGUCUGC-C----UGC-GAGGAGaCAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 225139 | 0.72 | 0.672195 |
Target: 5'- cUCGGgAcGCGGACGCUCCUcCUGggugaCCGa -3' miRNA: 3'- -AGUCgUcUGCCUGCGAGGA-GACa----GGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 203596 | 0.72 | 0.662403 |
Target: 5'- gCAGUccGGAcuCGGACGagUCCUCUGUCCc -3' miRNA: 3'- aGUCG--UCU--GCCUGCg-AGGAGACAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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