Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15880 | 3' | -57.3 | NC_004065.1 | + | 1890 | 0.69 | 0.797311 |
Target: 5'- cUCGGCAG-CGGACGUUggaguuguaucgagaUCUCUgGUCCa -3' miRNA: 3'- -AGUCGUCuGCCUGCGA---------------GGAGA-CAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 6748 | 0.67 | 0.905443 |
Target: 5'- gCGGCGGcacuCGGGuCGgUCCUCgugGUCCu -3' miRNA: 3'- aGUCGUCu---GCCU-GCgAGGAGa--CAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 17889 | 0.73 | 0.613249 |
Target: 5'- gCGGCGGACGGACGC-CCgucgagagaCUGUCg- -3' miRNA: 3'- aGUCGUCUGCCUGCGaGGa--------GACAGgc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 20095 | 0.68 | 0.860767 |
Target: 5'- aCGGCAuaucgacgggaacGACGGGCGCUcugacgacccucgaaCCUCUcGUUCGg -3' miRNA: 3'- aGUCGU-------------CUGCCUGCGA---------------GGAGA-CAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 23627 | 0.66 | 0.937282 |
Target: 5'- -gGGUGGACGGGCgGCUggCCUCgggCCGa -3' miRNA: 3'- agUCGUCUGCCUG-CGA--GGAGacaGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 27601 | 0.67 | 0.879878 |
Target: 5'- aCAGCAGAgaGGugGUUgCCUCgGcUCCGc -3' miRNA: 3'- aGUCGUCUg-CCugCGA-GGAGaC-AGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 32859 | 0.7 | 0.758016 |
Target: 5'- cCAGCgcguuggcgauGGACaGGucGCGCUCCUC-GUCCGa -3' miRNA: 3'- aGUCG-----------UCUG-CC--UGCGAGGAGaCAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 35079 | 0.69 | 0.810974 |
Target: 5'- cCAGCuggcgAGACGGGgGCUgUCUCUGUgCGa -3' miRNA: 3'- aGUCG-----UCUGCCUgCGA-GGAGACAgGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 51065 | 0.66 | 0.932526 |
Target: 5'- aCAGUagAGAUGGACaGUUCUaUCUGUCUa -3' miRNA: 3'- aGUCG--UCUGCCUG-CGAGG-AGACAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 53649 | 0.77 | 0.393445 |
Target: 5'- -gAGCAGAUGGugGCgCCUC-GUCCGc -3' miRNA: 3'- agUCGUCUGCCugCGaGGAGaCAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 53872 | 1 | 0.01533 |
Target: 5'- cUCAGCAGACGGACGCUCCUC-GUCCGa -3' miRNA: 3'- -AGUCGUCUGCCUGCGAGGAGaCAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 54508 | 0.66 | 0.927551 |
Target: 5'- gCGGCGuuacucuuucGGCGGACGCg-UUCUGUCUa -3' miRNA: 3'- aGUCGU----------CUGCCUGCGagGAGACAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 61567 | 0.66 | 0.932526 |
Target: 5'- -aGGgGGACGG-CGUUCCUCUuGgacgCCGu -3' miRNA: 3'- agUCgUCUGCCuGCGAGGAGA-Ca---GGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 61719 | 0.67 | 0.905443 |
Target: 5'- gCGGCGGAUGcGagccauGCGCUCCUUggcggGUUCGg -3' miRNA: 3'- aGUCGUCUGC-C------UGCGAGGAGa----CAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 64356 | 0.66 | 0.916382 |
Target: 5'- -uGGCAGAuccucuCGGAuCGCgUCCugcaggcUCUGUCCGa -3' miRNA: 3'- agUCGUCU------GCCU-GCG-AGG-------AGACAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 67521 | 0.68 | 0.843386 |
Target: 5'- cUCGuGCGGAUGuucaaccuaguGGCGCUCCUC-GUCCu -3' miRNA: 3'- -AGU-CGUCUGC-----------CUGCGAGGAGaCAGGc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 76736 | 0.73 | 0.593631 |
Target: 5'- cUCGGCggGGACGGGCGCggcgccggcggCCUCgucaucGUCCGg -3' miRNA: 3'- -AGUCG--UCUGCCUGCGa----------GGAGa-----CAGGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 82140 | 0.67 | 0.910145 |
Target: 5'- cCGGCGGcGCGGACGCUguaCCUcCUGgcgaggcaccagCCGa -3' miRNA: 3'- aGUCGUC-UGCCUGCGA---GGA-GACa-----------GGC- -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 86856 | 0.66 | 0.932526 |
Target: 5'- cUCGGCGGACaGGAUGaagUCCUCgucGUCa- -3' miRNA: 3'- -AGUCGUCUG-CCUGCg--AGGAGa--CAGgc -5' |
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15880 | 3' | -57.3 | NC_004065.1 | + | 90993 | 0.66 | 0.927041 |
Target: 5'- -uGGCGGACGGACuGCagcgUCUUCUugacgcgGUCCa -3' miRNA: 3'- agUCGUCUGCCUG-CG----AGGAGA-------CAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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