miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 3' -57.3 NC_004065.1 + 120387 0.67 0.911299
Target:  5'- cCGGCggaucGGGCGGACGCUgCUCcuucgCCGc -3'
miRNA:   3'- aGUCG-----UCUGCCUGCGAgGAGaca--GGC- -5'
15880 3' -57.3 NC_004065.1 + 224802 0.68 0.843386
Target:  5'- gCGGCAGcACGGucACGaccgCCgUCUGUCCGu -3'
miRNA:   3'- aGUCGUC-UGCC--UGCga--GG-AGACAGGC- -5'
15880 3' -57.3 NC_004065.1 + 198021 0.68 0.851063
Target:  5'- cUCucCAGACGcuccuugcGGCGCUCuCUCUGUCUGa -3'
miRNA:   3'- -AGucGUCUGC--------CUGCGAG-GAGACAGGC- -5'
15880 3' -57.3 NC_004065.1 + 20095 0.68 0.860767
Target:  5'- aCGGCAuaucgacgggaacGACGGGCGCUcugacgacccucgaaCCUCUcGUUCGg -3'
miRNA:   3'- aGUCGU-------------CUGCCUGCGA---------------GGAGA-CAGGC- -5'
15880 3' -57.3 NC_004065.1 + 201518 0.68 0.865859
Target:  5'- uUCAGCAgucccaugcGACGGA-GCUCCgcggcgCUGUCgGc -3'
miRNA:   3'- -AGUCGU---------CUGCCUgCGAGGa-----GACAGgC- -5'
15880 3' -57.3 NC_004065.1 + 98264 0.67 0.879878
Target:  5'- aCGGCGGcccUGGGCGCgcgCCUCgcgGaUCCGg -3'
miRNA:   3'- aGUCGUCu--GCCUGCGa--GGAGa--C-AGGC- -5'
15880 3' -57.3 NC_004065.1 + 165852 0.67 0.89937
Target:  5'- aCGGCGGGgcCGGACGgUCuCUCacgGUCCc -3'
miRNA:   3'- aGUCGUCU--GCCUGCgAG-GAGa--CAGGc -5'
15880 3' -57.3 NC_004065.1 + 61719 0.67 0.905443
Target:  5'- gCGGCGGAUGcGagccauGCGCUCCUUggcggGUUCGg -3'
miRNA:   3'- aGUCGUCUGC-C------UGCGAGGAGa----CAGGC- -5'
15880 3' -57.3 NC_004065.1 + 82140 0.67 0.910145
Target:  5'- cCGGCGGcGCGGACGCUguaCCUcCUGgcgaggcaccagCCGa -3'
miRNA:   3'- aGUCGUC-UGCCUGCGA---GGA-GACa-----------GGC- -5'
15880 3' -57.3 NC_004065.1 + 148465 0.68 0.834738
Target:  5'- aCAGCaugcagaucucggGGACGuGGCGCgugaUCCUCggGUCCGu -3'
miRNA:   3'- aGUCG-------------UCUGC-CUGCG----AGGAGa-CAGGC- -5'
15880 3' -57.3 NC_004065.1 + 1890 0.69 0.797311
Target:  5'- cUCGGCAG-CGGACGUUggaguuguaucgagaUCUCUgGUCCa -3'
miRNA:   3'- -AGUCGUCuGCCUGCGA---------------GGAGA-CAGGc -5'
15880 3' -57.3 NC_004065.1 + 115543 0.7 0.767146
Target:  5'- --uGCGGGCGGGCGagcgucugUCUCUGUCUGu -3'
miRNA:   3'- aguCGUCUGCCUGCga------GGAGACAGGC- -5'
15880 3' -57.3 NC_004065.1 + 76736 0.73 0.593631
Target:  5'- cUCGGCggGGACGGGCGCggcgccggcggCCUCgucaucGUCCGg -3'
miRNA:   3'- -AGUCG--UCUGCCUGCGa----------GGAGa-----CAGGC- -5'
15880 3' -57.3 NC_004065.1 + 176112 0.73 0.593631
Target:  5'- gCGGUAuccuGACGGGCGCUCCUCgcgucGUCUc -3'
miRNA:   3'- aGUCGU----CUGCCUGCGAGGAGa----CAGGc -5'
15880 3' -57.3 NC_004065.1 + 192337 0.73 0.593631
Target:  5'- -gAGgGGACGuGACggGCUCCUCUGUCaCGa -3'
miRNA:   3'- agUCgUCUGC-CUG--CGAGGAGACAG-GC- -5'
15880 3' -57.3 NC_004065.1 + 17889 0.73 0.613249
Target:  5'- gCGGCGGACGGACGC-CCgucgagagaCUGUCg- -3'
miRNA:   3'- aGUCGUCUGCCUGCGaGGa--------GACAGgc -5'
15880 3' -57.3 NC_004065.1 + 122022 0.72 0.623081
Target:  5'- gUCGGgAGG-GGGCGCUCUucucugUCUGUCCGu -3'
miRNA:   3'- -AGUCgUCUgCCUGCGAGG------AGACAGGC- -5'
15880 3' -57.3 NC_004065.1 + 203596 0.72 0.662403
Target:  5'- gCAGUccGGAcuCGGACGagUCCUCUGUCCc -3'
miRNA:   3'- aGUCG--UCU--GCCUGCg-AGGAGACAGGc -5'
15880 3' -57.3 NC_004065.1 + 225139 0.72 0.672195
Target:  5'- cUCGGgAcGCGGACGCUCCUcCUGggugaCCGa -3'
miRNA:   3'- -AGUCgUcUGCCUGCGAGGA-GACa----GGC- -5'
15880 3' -57.3 NC_004065.1 + 32859 0.7 0.758016
Target:  5'- cCAGCgcguuggcgauGGACaGGucGCGCUCCUC-GUCCGa -3'
miRNA:   3'- aGUCG-----------UCUG-CC--UGCGAGGAGaCAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.