miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 81275 0.66 0.842142
Target:  5'- --gGACGcCGAGGA-CGCCCuGUC-GGAg -3'
miRNA:   3'- cugCUGC-GCUCCUcGCGGG-CAGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 89985 0.66 0.842142
Target:  5'- gGACGACGaCG-GGAGCGaaCCCGaC-GGAg -3'
miRNA:   3'- -CUGCUGC-GCuCCUCGC--GGGCaGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 130301 0.66 0.842142
Target:  5'- gGACGACGaGAGGGGaacCGCCuuCGUCAGc- -3'
miRNA:   3'- -CUGCUGCgCUCCUC---GCGG--GCAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 161280 0.66 0.83444
Target:  5'- cGCGAUGUccGAguccGGcAGCGacCCCGUCAGGAu -3'
miRNA:   3'- cUGCUGCG--CU----CC-UCGC--GGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 108389 0.66 0.829741
Target:  5'- cGACGACGCGcucaacgccauccucGGGGGCauccuGCCCuacCGGGGg -3'
miRNA:   3'- -CUGCUGCGC---------------UCCUCG-----CGGGca-GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 138132 0.66 0.826577
Target:  5'- uGACGuuuuCGuCGAGGAGaaCCCGcCGGGGg -3'
miRNA:   3'- -CUGCu---GC-GCUCCUCgcGGGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 229672 0.66 0.826577
Target:  5'- gGugGGCGuCGGGGcgcGCGUCCGcUCGGcGAu -3'
miRNA:   3'- -CugCUGC-GCUCCu--CGCGGGC-AGUC-CU- -5'
15880 5' -60.5 NC_004065.1 + 129822 0.66 0.825782
Target:  5'- cGACGuggaccucaagcuGCGCGAGGAccugcaGgGUcugagCCGUCAGGAg -3'
miRNA:   3'- -CUGC-------------UGCGCUCCU------CgCG-----GGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 160135 0.66 0.818556
Target:  5'- cGACGGCgucuGCGAGGAGaacgaGUCCGacaccaccuUCAGGu -3'
miRNA:   3'- -CUGCUG----CGCUCCUCg----CGGGC---------AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 143046 0.66 0.817746
Target:  5'- cGAgGACguuuucacucuggGCGAGGGGCGCU--UCGGGGg -3'
miRNA:   3'- -CUgCUG-------------CGCUCCUCGCGGgcAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 74132 0.66 0.813672
Target:  5'- cGAgGACGuCGAGGcgGGUGCCCGggccgagaaccccgCAGGc -3'
miRNA:   3'- -CUgCUGC-GCUCC--UCGCGGGCa-------------GUCCu -5'
15880 5' -60.5 NC_004065.1 + 120527 0.66 0.810387
Target:  5'- cACGGCGuUGAGGA-CGCCCaUgAGGAg -3'
miRNA:   3'- cUGCUGC-GCUCCUcGCGGGcAgUCCU- -5'
15880 5' -60.5 NC_004065.1 + 115065 0.66 0.810387
Target:  5'- cGGCGcGCGCGAGGAcGCGgCCUcgGUCGGc- -3'
miRNA:   3'- -CUGC-UGCGCUCCU-CGC-GGG--CAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 200308 0.66 0.810387
Target:  5'- cGGCGgaACGCaggcaGAGGuaccaGCCCGUCGGGGc -3'
miRNA:   3'- -CUGC--UGCG-----CUCCucg--CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 128905 0.66 0.810387
Target:  5'- uGCGACGCGAGGgcgAGgGCuCCGUUuacGGc -3'
miRNA:   3'- cUGCUGCGCUCC---UCgCG-GGCAGu--CCu -5'
15880 5' -60.5 NC_004065.1 + 127223 0.66 0.810387
Target:  5'- cGGCGGcCGCGAGGAucGgGCgCGguggCGGGGa -3'
miRNA:   3'- -CUGCU-GCGCUCCU--CgCGgGCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 33308 0.66 0.807908
Target:  5'- cGGCGACGCGAacguaauucuccucGaagaGGCGgauCCCGUCGGGGu -3'
miRNA:   3'- -CUGCUGCGCU--------------Cc---UCGC---GGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 37580 0.66 0.802075
Target:  5'- cGAUGGCGUGAucggccgguuuaGGugccGCGUCCGcUCGGGAu -3'
miRNA:   3'- -CUGCUGCGCU------------CCu---CGCGGGC-AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 180408 0.66 0.802075
Target:  5'- gGACGAaguacUGCGAGaugaacGAGCgGUUCGUCAGGGa -3'
miRNA:   3'- -CUGCU-----GCGCUC------CUCG-CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 60558 0.66 0.800396
Target:  5'- aGACGACGgagacgcCGGguccgcacacggcGGGGCGCCCGauguucUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------GCU-------------CCUCGCGGGC------AGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.