miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 53905 1.08 0.002287
Target:  5'- aGACGACGCGAGGAGCGCCCGUCAGGAu -3'
miRNA:   3'- -CUGCUGCGCUCCUCGCGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 70342 0.78 0.223656
Target:  5'- cGACGGCgGCGAGGAGCGCC--UCGGGu -3'
miRNA:   3'- -CUGCUG-CGCUCCUCGCGGgcAGUCCu -5'
15880 5' -60.5 NC_004065.1 + 103704 0.78 0.223656
Target:  5'- gGugGGCgGCGGGGAGCGCCUGgCGGGc -3'
miRNA:   3'- -CugCUG-CGCUCCUCGCGGGCaGUCCu -5'
15880 5' -60.5 NC_004065.1 + 30874 0.76 0.305831
Target:  5'- cGACGGCGgGuucGAGCGCCCG-CAGGGc -3'
miRNA:   3'- -CUGCUGCgCuc-CUCGCGGGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 74816 0.75 0.340329
Target:  5'- uGACGA-GCGuGGAGaCGCCCGggUCGGGAc -3'
miRNA:   3'- -CUGCUgCGCuCCUC-GCGGGC--AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 80468 0.75 0.362342
Target:  5'- cGACGAgCGCGAGucggacGAGCGCCUGUCgcgucucuGGGAg -3'
miRNA:   3'- -CUGCU-GCGCUC------CUCGCGGGCAG--------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 186690 0.74 0.409252
Target:  5'- cGCGGCGCGuGGGGCGucCCCGcCGGGc -3'
miRNA:   3'- cUGCUGCGCuCCUCGC--GGGCaGUCCu -5'
15880 5' -60.5 NC_004065.1 + 139319 0.74 0.409252
Target:  5'- aACGACgGCGAGGAGCGCaggaaaCGcaugCGGGAg -3'
miRNA:   3'- cUGCUG-CGCUCCUCGCGg-----GCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 74920 0.73 0.442552
Target:  5'- aGGCGACGCagGGGGAGCugGCCUgGUUGGGAa -3'
miRNA:   3'- -CUGCUGCG--CUCCUCG--CGGG-CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 66650 0.71 0.546792
Target:  5'- -uCGGCGCGGuGGGCGCCCGgcgaguguucgacCAGGAu -3'
miRNA:   3'- cuGCUGCGCUcCUCGCGGGCa------------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 153272 0.71 0.559023
Target:  5'- gGACGAUGaCGAGGccgccggcgccGCGCCCGUCcccgccgAGGAg -3'
miRNA:   3'- -CUGCUGC-GCUCCu----------CGCGGGCAG-------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 186594 0.71 0.559967
Target:  5'- cGACGACGaUGAGGAGUGUCgaugGUgAGGAg -3'
miRNA:   3'- -CUGCUGC-GCUCCUCGCGGg---CAgUCCU- -5'
15880 5' -60.5 NC_004065.1 + 18164 0.71 0.569431
Target:  5'- uAUGAcCGUGuGGAGCGCCgGcCGGGAc -3'
miRNA:   3'- cUGCU-GCGCuCCUCGCGGgCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 184896 0.7 0.598037
Target:  5'- aGAgGAuCGgGAGcGGGCGCCCGgguggcUCGGGAg -3'
miRNA:   3'- -CUgCU-GCgCUC-CUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 22490 0.7 0.607624
Target:  5'- cGACGACGC--GGAGCGCgCGgcgAGGAg -3'
miRNA:   3'- -CUGCUGCGcuCCUCGCGgGCag-UCCU- -5'
15880 5' -60.5 NC_004065.1 + 58618 0.7 0.607624
Target:  5'- cGACGcGCGCGGcGGAGuCGCCgGUCucgcGGAu -3'
miRNA:   3'- -CUGC-UGCGCU-CCUC-GCGGgCAGu---CCU- -5'
15880 5' -60.5 NC_004065.1 + 148582 0.7 0.607624
Target:  5'- -cCG-UGCGGGGccuGGUGCCgGUCAGGAa -3'
miRNA:   3'- cuGCuGCGCUCC---UCGCGGgCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 116632 0.7 0.607624
Target:  5'- cGACGuCGCGAGGgagccgcaGGCGUUCGUCcugAGGGu -3'
miRNA:   3'- -CUGCuGCGCUCC--------UCGCGGGCAG---UCCU- -5'
15880 5' -60.5 NC_004065.1 + 60072 0.7 0.611463
Target:  5'- uGCGACGCGGGccGCGCUCGUCgucgucgaagaggucGGGGu -3'
miRNA:   3'- cUGCUGCGCUCcuCGCGGGCAG---------------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 34342 0.69 0.636457
Target:  5'- cGugGACGaGAGGAGCcuuccCCCGaUCAGGu -3'
miRNA:   3'- -CugCUGCgCUCCUCGc----GGGC-AGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.