miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 59934 0.69 0.646071
Target:  5'- cGCGGCGCGGccagaagcccGGAGUgguGCCCGcCAGGu -3'
miRNA:   3'- cUGCUGCGCU----------CCUCG---CGGGCaGUCCu -5'
15880 5' -60.5 NC_004065.1 + 120349 0.69 0.655675
Target:  5'- cGGCGAUGuCGucGGaGAGCGCCCGg-AGGAc -3'
miRNA:   3'- -CUGCUGC-GC--UC-CUCGCGGGCagUCCU- -5'
15880 5' -60.5 NC_004065.1 + 19068 0.69 0.655675
Target:  5'- uGACGACGagGAGGAgaccGCGCCCagguUCGGGu -3'
miRNA:   3'- -CUGCUGCg-CUCCU----CGCGGGc---AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 114158 0.69 0.683408
Target:  5'- cGCGACGCuucccgggacucuGAGGAGCGCgCCGcCGGc- -3'
miRNA:   3'- cUGCUGCG-------------CUCCUCGCG-GGCaGUCcu -5'
15880 5' -60.5 NC_004065.1 + 116723 0.68 0.693854
Target:  5'- cGGCG-CGCGAGcGGcGuCGCCCGUCAuGGu -3'
miRNA:   3'- -CUGCuGCGCUC-CU-C-GCGGGCAGU-CCu -5'
15880 5' -60.5 NC_004065.1 + 133564 0.68 0.731304
Target:  5'- gGGCGACGUGAuguugcucGGGGuCGCCUGUaucCAGGu -3'
miRNA:   3'- -CUGCUGCGCU--------CCUC-GCGGGCA---GUCCu -5'
15880 5' -60.5 NC_004065.1 + 4361 0.68 0.731304
Target:  5'- cGGCuGCGCGuGGAGCGCgaCGgcggcggCGGGAg -3'
miRNA:   3'- -CUGcUGCGCuCCUCGCGg-GCa------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 119523 0.68 0.731304
Target:  5'- gGGCGGCGCGGGGAcGUGgUCGagggcCAGGGc -3'
miRNA:   3'- -CUGCUGCGCUCCU-CGCgGGCa----GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 34606 0.68 0.737746
Target:  5'- cGGCGACGCGgcGGGAGCGUacguguacggcucgCCGU--GGAa -3'
miRNA:   3'- -CUGCUGCGC--UCCUCGCG--------------GGCAguCCU- -5'
15880 5' -60.5 NC_004065.1 + 24542 0.68 0.740495
Target:  5'- cGACGACGgcaGcGGAGacgaGCCCcucGUCGGGAu -3'
miRNA:   3'- -CUGCUGCg--CuCCUCg---CGGG---CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 99211 0.68 0.740495
Target:  5'- aGACGGC-CGAGGcGCGCUC--CAGGAa -3'
miRNA:   3'- -CUGCUGcGCUCCuCGCGGGcaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 197351 0.68 0.740495
Target:  5'- aGGCGcuGCGCGAGaaccGCGCCCGcgAGGAa -3'
miRNA:   3'- -CUGC--UGCGCUCcu--CGCGGGCagUCCU- -5'
15880 5' -60.5 NC_004065.1 + 53759 0.67 0.758621
Target:  5'- uGACGAugcagaucacUGCGAGGAcggagGCGUaaaccaCGUCGGGAg -3'
miRNA:   3'- -CUGCU----------GCGCUCCU-----CGCGg-----GCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 119615 0.67 0.758621
Target:  5'- cGGCGGCG-GAGGAGaCGCC-GUCGGc- -3'
miRNA:   3'- -CUGCUGCgCUCCUC-GCGGgCAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 67763 0.67 0.766652
Target:  5'- cGACGGCGUGAcgaacggcGcGGGCGCCCagacuucguccaaGUCGGGc -3'
miRNA:   3'- -CUGCUGCGCU--------C-CUCGCGGG-------------CAGUCCu -5'
15880 5' -60.5 NC_004065.1 + 78452 0.67 0.766652
Target:  5'- cGACGACGguCGAGGAugaugaugucuccGCGCCgCGUCAa-- -3'
miRNA:   3'- -CUGCUGC--GCUCCU-------------CGCGG-GCAGUccu -5'
15880 5' -60.5 NC_004065.1 + 103535 0.67 0.76754
Target:  5'- uGGCGACGCGGGuGcAGCGCgCCaacaucgcgCAGGGc -3'
miRNA:   3'- -CUGCUGCGCUC-C-UCGCG-GGca-------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 135391 0.67 0.776352
Target:  5'- -gUGACGCGccGGccGCGCCCGaccccgUCAGGAg -3'
miRNA:   3'- cuGCUGCGCu-CCu-CGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 64574 0.67 0.78505
Target:  5'- -cCGcCGCGGGGAGCGCgUCGaCuGGAa -3'
miRNA:   3'- cuGCuGCGCUCCUCGCG-GGCaGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 190584 0.67 0.792774
Target:  5'- aGACGACGaguauuacugggaCGAgacuGGGGauauauGCCCGUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------------GCU----CCUCg-----CGGGCAGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.