Results 61 - 63 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15880 | 5' | -60.5 | NC_004065.1 | + | 130301 | 0.66 | 0.842142 |
Target: 5'- gGACGACGaGAGGGGaacCGCCuuCGUCAGc- -3' miRNA: 3'- -CUGCUGCgCUCCUC---GCGG--GCAGUCcu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 81275 | 0.66 | 0.842142 |
Target: 5'- --gGACGcCGAGGA-CGCCCuGUC-GGAg -3' miRNA: 3'- cugCUGC-GCUCCUcGCGGG-CAGuCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 89985 | 0.66 | 0.842142 |
Target: 5'- gGACGACGaCG-GGAGCGaaCCCGaC-GGAg -3' miRNA: 3'- -CUGCUGC-GCuCCUCGC--GGGCaGuCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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