miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 4361 0.68 0.731304
Target:  5'- cGGCuGCGCGuGGAGCGCgaCGgcggcggCGGGAg -3'
miRNA:   3'- -CUGcUGCGCuCCUCGCGg-GCa------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 18164 0.71 0.569431
Target:  5'- uAUGAcCGUGuGGAGCGCCgGcCGGGAc -3'
miRNA:   3'- cUGCU-GCGCuCCUCGCGGgCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 19068 0.69 0.655675
Target:  5'- uGACGACGagGAGGAgaccGCGCCCagguUCGGGu -3'
miRNA:   3'- -CUGCUGCg-CUCCU----CGCGGGc---AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 22490 0.7 0.607624
Target:  5'- cGACGACGC--GGAGCGCgCGgcgAGGAg -3'
miRNA:   3'- -CUGCUGCGcuCCUCGCGgGCag-UCCU- -5'
15880 5' -60.5 NC_004065.1 + 24542 0.68 0.740495
Target:  5'- cGACGACGgcaGcGGAGacgaGCCCcucGUCGGGAu -3'
miRNA:   3'- -CUGCUGCg--CuCCUCg---CGGG---CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 30874 0.76 0.305831
Target:  5'- cGACGGCGgGuucGAGCGCCCG-CAGGGc -3'
miRNA:   3'- -CUGCUGCgCuc-CUCGCGGGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 33308 0.66 0.807908
Target:  5'- cGGCGACGCGAacguaauucuccucGaagaGGCGgauCCCGUCGGGGu -3'
miRNA:   3'- -CUGCUGCGCU--------------Cc---UCGC---GGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 34342 0.69 0.636457
Target:  5'- cGugGACGaGAGGAGCcuuccCCCGaUCAGGu -3'
miRNA:   3'- -CugCUGCgCUCCUCGc----GGGC-AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 34606 0.68 0.737746
Target:  5'- cGGCGACGCGgcGGGAGCGUacguguacggcucgCCGU--GGAa -3'
miRNA:   3'- -CUGCUGCGC--UCCUCGCG--------------GGCAguCCU- -5'
15880 5' -60.5 NC_004065.1 + 37580 0.66 0.802075
Target:  5'- cGAUGGCGUGAucggccgguuuaGGugccGCGUCCGcUCGGGAu -3'
miRNA:   3'- -CUGCUGCGCU------------CCu---CGCGGGC-AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 53759 0.67 0.758621
Target:  5'- uGACGAugcagaucacUGCGAGGAcggagGCGUaaaccaCGUCGGGAg -3'
miRNA:   3'- -CUGCU----------GCGCUCCU-----CGCGg-----GCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 53905 1.08 0.002287
Target:  5'- aGACGACGCGAGGAGCGCCCGUCAGGAu -3'
miRNA:   3'- -CUGCUGCGCUCCUCGCGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 58618 0.7 0.607624
Target:  5'- cGACGcGCGCGGcGGAGuCGCCgGUCucgcGGAu -3'
miRNA:   3'- -CUGC-UGCGCU-CCUC-GCGGgCAGu---CCU- -5'
15880 5' -60.5 NC_004065.1 + 59934 0.69 0.646071
Target:  5'- cGCGGCGCGGccagaagcccGGAGUgguGCCCGcCAGGu -3'
miRNA:   3'- cUGCUGCGCU----------CCUCG---CGGGCaGUCCu -5'
15880 5' -60.5 NC_004065.1 + 60072 0.7 0.611463
Target:  5'- uGCGACGCGGGccGCGCUCGUCgucgucgaagaggucGGGGu -3'
miRNA:   3'- cUGCUGCGCUCcuCGCGGGCAG---------------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 60558 0.66 0.800396
Target:  5'- aGACGACGgagacgcCGGguccgcacacggcGGGGCGCCCGauguucUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------GCU-------------CCUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 64574 0.67 0.78505
Target:  5'- -cCGcCGCGGGGAGCGCgUCGaCuGGAa -3'
miRNA:   3'- cuGCuGCGCUCCUCGCG-GGCaGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 66650 0.71 0.546792
Target:  5'- -uCGGCGCGGuGGGCGCCCGgcgaguguucgacCAGGAu -3'
miRNA:   3'- cuGCUGCGCUcCUCGCGGGCa------------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 67763 0.67 0.766652
Target:  5'- cGACGGCGUGAcgaacggcGcGGGCGCCCagacuucguccaaGUCGGGc -3'
miRNA:   3'- -CUGCUGCGCU--------C-CUCGCGGG-------------CAGUCCu -5'
15880 5' -60.5 NC_004065.1 + 70342 0.78 0.223656
Target:  5'- cGACGGCgGCGAGGAGCGCC--UCGGGu -3'
miRNA:   3'- -CUGCUG-CGCUCCUCGCGGgcAGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.