miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 127223 0.66 0.810387
Target:  5'- cGGCGGcCGCGAGGAucGgGCgCGguggCGGGGa -3'
miRNA:   3'- -CUGCU-GCGCUCCU--CgCGgGCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 128905 0.66 0.810387
Target:  5'- uGCGACGCGAGGgcgAGgGCuCCGUUuacGGc -3'
miRNA:   3'- cUGCUGCGCUCC---UCgCG-GGCAGu--CCu -5'
15880 5' -60.5 NC_004065.1 + 129822 0.66 0.825782
Target:  5'- cGACGuggaccucaagcuGCGCGAGGAccugcaGgGUcugagCCGUCAGGAg -3'
miRNA:   3'- -CUGC-------------UGCGCUCCU------CgCG-----GGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 130301 0.66 0.842142
Target:  5'- gGACGACGaGAGGGGaacCGCCuuCGUCAGc- -3'
miRNA:   3'- -CUGCUGCgCUCCUC---GCGG--GCAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 133564 0.68 0.731304
Target:  5'- gGGCGACGUGAuguugcucGGGGuCGCCUGUaucCAGGu -3'
miRNA:   3'- -CUGCUGCGCU--------CCUC-GCGGGCA---GUCCu -5'
15880 5' -60.5 NC_004065.1 + 135391 0.67 0.776352
Target:  5'- -gUGACGCGccGGccGCGCCCGaccccgUCAGGAg -3'
miRNA:   3'- cuGCUGCGCu-CCu-CGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 138132 0.66 0.826577
Target:  5'- uGACGuuuuCGuCGAGGAGaaCCCGcCGGGGg -3'
miRNA:   3'- -CUGCu---GC-GCUCCUCgcGGGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 139319 0.74 0.409252
Target:  5'- aACGACgGCGAGGAGCGCaggaaaCGcaugCGGGAg -3'
miRNA:   3'- cUGCUG-CGCUCCUCGCGg-----GCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 143046 0.66 0.817746
Target:  5'- cGAgGACguuuucacucuggGCGAGGGGCGCU--UCGGGGg -3'
miRNA:   3'- -CUgCUG-------------CGCUCCUCGCGGgcAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 148582 0.7 0.607624
Target:  5'- -cCG-UGCGGGGccuGGUGCCgGUCAGGAa -3'
miRNA:   3'- cuGCuGCGCUCC---UCGCGGgCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 153272 0.71 0.559023
Target:  5'- gGACGAUGaCGAGGccgccggcgccGCGCCCGUCcccgccgAGGAg -3'
miRNA:   3'- -CUGCUGC-GCUCCu----------CGCGGGCAG-------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 160135 0.66 0.818556
Target:  5'- cGACGGCgucuGCGAGGAGaacgaGUCCGacaccaccuUCAGGu -3'
miRNA:   3'- -CUGCUG----CGCUCCUCg----CGGGC---------AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 161280 0.66 0.83444
Target:  5'- cGCGAUGUccGAguccGGcAGCGacCCCGUCAGGAu -3'
miRNA:   3'- cUGCUGCG--CU----CC-UCGC--GGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 177470 0.67 0.793626
Target:  5'- aGAUGAUGCGcucggcGGGGGCGCaCGgCGGGGc -3'
miRNA:   3'- -CUGCUGCGC------UCCUCGCGgGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 180408 0.66 0.802075
Target:  5'- gGACGAaguacUGCGAGaugaacGAGCgGUUCGUCAGGGa -3'
miRNA:   3'- -CUGCU-----GCGCUC------CUCG-CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 184896 0.7 0.598037
Target:  5'- aGAgGAuCGgGAGcGGGCGCCCGgguggcUCGGGAg -3'
miRNA:   3'- -CUgCU-GCgCUC-CUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 186594 0.71 0.559967
Target:  5'- cGACGACGaUGAGGAGUGUCgaugGUgAGGAg -3'
miRNA:   3'- -CUGCUGC-GCUCCUCGCGGg---CAgUCCU- -5'
15880 5' -60.5 NC_004065.1 + 186690 0.74 0.409252
Target:  5'- cGCGGCGCGuGGGGCGucCCCGcCGGGc -3'
miRNA:   3'- cUGCUGCGCuCCUCGC--GGGCaGUCCu -5'
15880 5' -60.5 NC_004065.1 + 190584 0.67 0.792774
Target:  5'- aGACGACGaguauuacugggaCGAgacuGGGGauauauGCCCGUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------------GCU----CCUCg-----CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 197351 0.68 0.740495
Target:  5'- aGGCGcuGCGCGAGaaccGCGCCCGcgAGGAa -3'
miRNA:   3'- -CUGC--UGCGCUCcu--CGCGGGCagUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.