miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 129822 0.66 0.825782
Target:  5'- cGACGuggaccucaagcuGCGCGAGGAccugcaGgGUcugagCCGUCAGGAg -3'
miRNA:   3'- -CUGC-------------UGCGCUCCU------CgCG-----GGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 128905 0.66 0.810387
Target:  5'- uGCGACGCGAGGgcgAGgGCuCCGUUuacGGc -3'
miRNA:   3'- cUGCUGCGCUCC---UCgCG-GGCAGu--CCu -5'
15880 5' -60.5 NC_004065.1 + 127223 0.66 0.810387
Target:  5'- cGGCGGcCGCGAGGAucGgGCgCGguggCGGGGa -3'
miRNA:   3'- -CUGCU-GCGCUCCU--CgCGgGCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 120527 0.66 0.810387
Target:  5'- cACGGCGuUGAGGA-CGCCCaUgAGGAg -3'
miRNA:   3'- cUGCUGC-GCUCCUcGCGGGcAgUCCU- -5'
15880 5' -60.5 NC_004065.1 + 120349 0.69 0.655675
Target:  5'- cGGCGAUGuCGucGGaGAGCGCCCGg-AGGAc -3'
miRNA:   3'- -CUGCUGC-GC--UC-CUCGCGGGCagUCCU- -5'
15880 5' -60.5 NC_004065.1 + 119615 0.67 0.758621
Target:  5'- cGGCGGCG-GAGGAGaCGCC-GUCGGc- -3'
miRNA:   3'- -CUGCUGCgCUCCUC-GCGGgCAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 119523 0.68 0.731304
Target:  5'- gGGCGGCGCGGGGAcGUGgUCGagggcCAGGGc -3'
miRNA:   3'- -CUGCUGCGCUCCU-CGCgGGCa----GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 116723 0.68 0.693854
Target:  5'- cGGCG-CGCGAGcGGcGuCGCCCGUCAuGGu -3'
miRNA:   3'- -CUGCuGCGCUC-CU-C-GCGGGCAGU-CCu -5'
15880 5' -60.5 NC_004065.1 + 116632 0.7 0.607624
Target:  5'- cGACGuCGCGAGGgagccgcaGGCGUUCGUCcugAGGGu -3'
miRNA:   3'- -CUGCuGCGCUCC--------UCGCGGGCAG---UCCU- -5'
15880 5' -60.5 NC_004065.1 + 115065 0.66 0.810387
Target:  5'- cGGCGcGCGCGAGGAcGCGgCCUcgGUCGGc- -3'
miRNA:   3'- -CUGC-UGCGCUCCU-CGC-GGG--CAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 114158 0.69 0.683408
Target:  5'- cGCGACGCuucccgggacucuGAGGAGCGCgCCGcCGGc- -3'
miRNA:   3'- cUGCUGCG-------------CUCCUCGCG-GGCaGUCcu -5'
15880 5' -60.5 NC_004065.1 + 110195 0.67 0.793626
Target:  5'- cGCGACGCGccGc-CGCCCGUCgagaGGGAa -3'
miRNA:   3'- cUGCUGCGCucCucGCGGGCAG----UCCU- -5'
15880 5' -60.5 NC_004065.1 + 108389 0.66 0.829741
Target:  5'- cGACGACGCGcucaacgccauccucGGGGGCauccuGCCCuacCGGGGg -3'
miRNA:   3'- -CUGCUGCGC---------------UCCUCG-----CGGGca-GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 103704 0.78 0.223656
Target:  5'- gGugGGCgGCGGGGAGCGCCUGgCGGGc -3'
miRNA:   3'- -CugCUG-CGCUCCUCGCGGGCaGUCCu -5'
15880 5' -60.5 NC_004065.1 + 103535 0.67 0.76754
Target:  5'- uGGCGACGCGGGuGcAGCGCgCCaacaucgcgCAGGGc -3'
miRNA:   3'- -CUGCUGCGCUC-C-UCGCG-GGca-------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 99211 0.68 0.740495
Target:  5'- aGACGGC-CGAGGcGCGCUC--CAGGAa -3'
miRNA:   3'- -CUGCUGcGCUCCuCGCGGGcaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 89985 0.66 0.842142
Target:  5'- gGACGACGaCG-GGAGCGaaCCCGaC-GGAg -3'
miRNA:   3'- -CUGCUGC-GCuCCUCGC--GGGCaGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 81275 0.66 0.842142
Target:  5'- --gGACGcCGAGGA-CGCCCuGUC-GGAg -3'
miRNA:   3'- cugCUGC-GCUCCUcGCGGG-CAGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 80468 0.75 0.362342
Target:  5'- cGACGAgCGCGAGucggacGAGCGCCUGUCgcgucucuGGGAg -3'
miRNA:   3'- -CUGCU-GCGCUC------CUCGCGGGCAG--------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 78452 0.67 0.766652
Target:  5'- cGACGACGguCGAGGAugaugaugucuccGCGCCgCGUCAa-- -3'
miRNA:   3'- -CUGCUGC--GCUCCU-------------CGCGG-GCAGUccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.