miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 33308 0.66 0.807908
Target:  5'- cGGCGACGCGAacguaauucuccucGaagaGGCGgauCCCGUCGGGGu -3'
miRNA:   3'- -CUGCUGCGCU--------------Cc---UCGC---GGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 133564 0.68 0.731304
Target:  5'- gGGCGACGUGAuguugcucGGGGuCGCCUGUaucCAGGu -3'
miRNA:   3'- -CUGCUGCGCU--------CCUC-GCGGGCA---GUCCu -5'
15880 5' -60.5 NC_004065.1 + 24542 0.68 0.740495
Target:  5'- cGACGACGgcaGcGGAGacgaGCCCcucGUCGGGAu -3'
miRNA:   3'- -CUGCUGCg--CuCCUCg---CGGG---CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 53759 0.67 0.758621
Target:  5'- uGACGAugcagaucacUGCGAGGAcggagGCGUaaaccaCGUCGGGAg -3'
miRNA:   3'- -CUGCU----------GCGCUCCU-----CGCGg-----GCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 67763 0.67 0.766652
Target:  5'- cGACGGCGUGAcgaacggcGcGGGCGCCCagacuucguccaaGUCGGGc -3'
miRNA:   3'- -CUGCUGCGCU--------C-CUCGCGGG-------------CAGUCCu -5'
15880 5' -60.5 NC_004065.1 + 78452 0.67 0.766652
Target:  5'- cGACGACGguCGAGGAugaugaugucuccGCGCCgCGUCAa-- -3'
miRNA:   3'- -CUGCUGC--GCUCCU-------------CGCGG-GCAGUccu -5'
15880 5' -60.5 NC_004065.1 + 135391 0.67 0.776352
Target:  5'- -gUGACGCGccGGccGCGCCCGaccccgUCAGGAg -3'
miRNA:   3'- cuGCUGCGCu-CCu-CGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 110195 0.67 0.793626
Target:  5'- cGCGACGCGccGc-CGCCCGUCgagaGGGAa -3'
miRNA:   3'- cUGCUGCGCucCucGCGGGCAG----UCCU- -5'
15880 5' -60.5 NC_004065.1 + 60558 0.66 0.800396
Target:  5'- aGACGACGgagacgcCGGguccgcacacggcGGGGCGCCCGauguucUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------GCU-------------CCUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 119523 0.68 0.731304
Target:  5'- gGGCGGCGCGGGGAcGUGgUCGagggcCAGGGc -3'
miRNA:   3'- -CUGCUGCGCUCCU-CGCgGGCa----GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 114158 0.69 0.683408
Target:  5'- cGCGACGCuucccgggacucuGAGGAGCGCgCCGcCGGc- -3'
miRNA:   3'- cUGCUGCG-------------CUCCUCGCG-GGCaGUCcu -5'
15880 5' -60.5 NC_004065.1 + 19068 0.69 0.655675
Target:  5'- uGACGACGagGAGGAgaccGCGCCCagguUCGGGu -3'
miRNA:   3'- -CUGCUGCg-CUCCU----CGCGGGc---AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 74816 0.75 0.340329
Target:  5'- uGACGA-GCGuGGAGaCGCCCGggUCGGGAc -3'
miRNA:   3'- -CUGCUgCGCuCCUC-GCGGGC--AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 139319 0.74 0.409252
Target:  5'- aACGACgGCGAGGAGCGCaggaaaCGcaugCGGGAg -3'
miRNA:   3'- cUGCUG-CGCUCCUCGCGg-----GCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 74920 0.73 0.442552
Target:  5'- aGGCGACGCagGGGGAGCugGCCUgGUUGGGAa -3'
miRNA:   3'- -CUGCUGCG--CUCCUCG--CGGG-CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 184896 0.7 0.598037
Target:  5'- aGAgGAuCGgGAGcGGGCGCCCGgguggcUCGGGAg -3'
miRNA:   3'- -CUgCU-GCgCUC-CUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 148582 0.7 0.607624
Target:  5'- -cCG-UGCGGGGccuGGUGCCgGUCAGGAa -3'
miRNA:   3'- cuGCuGCGCUCC---UCGCGGgCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 58618 0.7 0.607624
Target:  5'- cGACGcGCGCGGcGGAGuCGCCgGUCucgcGGAu -3'
miRNA:   3'- -CUGC-UGCGCU-CCUC-GCGGgCAGu---CCU- -5'
15880 5' -60.5 NC_004065.1 + 60072 0.7 0.611463
Target:  5'- uGCGACGCGGGccGCGCUCGUCgucgucgaagaggucGGGGu -3'
miRNA:   3'- cUGCUGCGCUCcuCGCGGGCAG---------------UCCU- -5'
15880 5' -60.5 NC_004065.1 + 59934 0.69 0.646071
Target:  5'- cGCGGCGCGGccagaagcccGGAGUgguGCCCGcCAGGu -3'
miRNA:   3'- cUGCUGCGCU----------CCUCG---CGGGCaGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.