Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15880 | 5' | -60.5 | NC_004065.1 | + | 160135 | 0.66 | 0.818556 |
Target: 5'- cGACGGCgucuGCGAGGAGaacgaGUCCGacaccaccuUCAGGu -3' miRNA: 3'- -CUGCUG----CGCUCCUCg----CGGGC---------AGUCCu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 129822 | 0.66 | 0.825782 |
Target: 5'- cGACGuggaccucaagcuGCGCGAGGAccugcaGgGUcugagCCGUCAGGAg -3' miRNA: 3'- -CUGC-------------UGCGCUCCU------CgCG-----GGCAGUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 138132 | 0.66 | 0.826577 |
Target: 5'- uGACGuuuuCGuCGAGGAGaaCCCGcCGGGGg -3' miRNA: 3'- -CUGCu---GC-GCUCCUCgcGGGCaGUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 161280 | 0.66 | 0.83444 |
Target: 5'- cGCGAUGUccGAguccGGcAGCGacCCCGUCAGGAu -3' miRNA: 3'- cUGCUGCG--CU----CC-UCGC--GGGCAGUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 99211 | 0.68 | 0.740495 |
Target: 5'- aGACGGC-CGAGGcGCGCUC--CAGGAa -3' miRNA: 3'- -CUGCUGcGCUCCuCGCGGGcaGUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 34606 | 0.68 | 0.737746 |
Target: 5'- cGGCGACGCGgcGGGAGCGUacguguacggcucgCCGU--GGAa -3' miRNA: 3'- -CUGCUGCGC--UCCUCGCG--------------GGCAguCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 70342 | 0.78 | 0.223656 |
Target: 5'- cGACGGCgGCGAGGAGCGCC--UCGGGu -3' miRNA: 3'- -CUGCUG-CGCUCCUCGCGGgcAGUCCu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 103704 | 0.78 | 0.223656 |
Target: 5'- gGugGGCgGCGGGGAGCGCCUGgCGGGc -3' miRNA: 3'- -CugCUG-CGCUCCUCGCGGGCaGUCCu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 80468 | 0.75 | 0.362342 |
Target: 5'- cGACGAgCGCGAGucggacGAGCGCCUGUCgcgucucuGGGAg -3' miRNA: 3'- -CUGCU-GCGCUC------CUCGCGGGCAG--------UCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 186690 | 0.74 | 0.409252 |
Target: 5'- cGCGGCGCGuGGGGCGucCCCGcCGGGc -3' miRNA: 3'- cUGCUGCGCuCCUCGC--GGGCaGUCCu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 66650 | 0.71 | 0.546792 |
Target: 5'- -uCGGCGCGGuGGGCGCCCGgcgaguguucgacCAGGAu -3' miRNA: 3'- cuGCUGCGCUcCUCGCGGGCa------------GUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 153272 | 0.71 | 0.559023 |
Target: 5'- gGACGAUGaCGAGGccgccggcgccGCGCCCGUCcccgccgAGGAg -3' miRNA: 3'- -CUGCUGC-GCUCCu----------CGCGGGCAG-------UCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 186594 | 0.71 | 0.559967 |
Target: 5'- cGACGACGaUGAGGAGUGUCgaugGUgAGGAg -3' miRNA: 3'- -CUGCUGC-GCUCCUCGCGGg---CAgUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 18164 | 0.71 | 0.569431 |
Target: 5'- uAUGAcCGUGuGGAGCGCCgGcCGGGAc -3' miRNA: 3'- cUGCU-GCGCuCCUCGCGGgCaGUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 22490 | 0.7 | 0.607624 |
Target: 5'- cGACGACGC--GGAGCGCgCGgcgAGGAg -3' miRNA: 3'- -CUGCUGCGcuCCUCGCGgGCag-UCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 116632 | 0.7 | 0.607624 |
Target: 5'- cGACGuCGCGAGGgagccgcaGGCGUUCGUCcugAGGGu -3' miRNA: 3'- -CUGCuGCGCUCC--------UCGCGGGCAG---UCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 34342 | 0.69 | 0.636457 |
Target: 5'- cGugGACGaGAGGAGCcuuccCCCGaUCAGGu -3' miRNA: 3'- -CugCUGCgCUCCUCGc----GGGC-AGUCCu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 120349 | 0.69 | 0.655675 |
Target: 5'- cGGCGAUGuCGucGGaGAGCGCCCGg-AGGAc -3' miRNA: 3'- -CUGCUGC-GC--UC-CUCGCGGGCagUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 116723 | 0.68 | 0.693854 |
Target: 5'- cGGCG-CGCGAGcGGcGuCGCCCGUCAuGGu -3' miRNA: 3'- -CUGCuGCGCUC-CU-C-GCGGGCAGU-CCu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 4361 | 0.68 | 0.731304 |
Target: 5'- cGGCuGCGCGuGGAGCGCgaCGgcggcggCGGGAg -3' miRNA: 3'- -CUGcUGCGCuCCUCGCGg-GCa------GUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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