miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 177470 0.67 0.793626
Target:  5'- aGAUGAUGCGcucggcGGGGGCGCaCGgCGGGGc -3'
miRNA:   3'- -CUGCUGCGC------UCCUCGCGgGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 119615 0.67 0.758621
Target:  5'- cGGCGGCG-GAGGAGaCGCC-GUCGGc- -3'
miRNA:   3'- -CUGCUGCgCUCCUC-GCGGgCAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 34606 0.68 0.737746
Target:  5'- cGGCGACGCGgcGGGAGCGUacguguacggcucgCCGU--GGAa -3'
miRNA:   3'- -CUGCUGCGC--UCCUCGCG--------------GGCAguCCU- -5'
15880 5' -60.5 NC_004065.1 + 129822 0.66 0.825782
Target:  5'- cGACGuggaccucaagcuGCGCGAGGAccugcaGgGUcugagCCGUCAGGAg -3'
miRNA:   3'- -CUGC-------------UGCGCUCCU------CgCG-----GGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 190584 0.67 0.792774
Target:  5'- aGACGACGaguauuacugggaCGAgacuGGGGauauauGCCCGUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------------GCU----CCUCg-----CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 4361 0.68 0.731304
Target:  5'- cGGCuGCGCGuGGAGCGCgaCGgcggcggCGGGAg -3'
miRNA:   3'- -CUGcUGCGCuCCUCGCGg-GCa------GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 160135 0.66 0.818556
Target:  5'- cGACGGCgucuGCGAGGAGaacgaGUCCGacaccaccuUCAGGu -3'
miRNA:   3'- -CUGCUG----CGCUCCUCg----CGGGC---------AGUCCu -5'
15880 5' -60.5 NC_004065.1 + 116723 0.68 0.693854
Target:  5'- cGGCG-CGCGAGcGGcGuCGCCCGUCAuGGu -3'
miRNA:   3'- -CUGCuGCGCUC-CU-C-GCGGGCAGU-CCu -5'
15880 5' -60.5 NC_004065.1 + 180408 0.66 0.802075
Target:  5'- gGACGAaguacUGCGAGaugaacGAGCgGUUCGUCAGGGa -3'
miRNA:   3'- -CUGCU-----GCGCUC------CUCG-CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 138132 0.66 0.826577
Target:  5'- uGACGuuuuCGuCGAGGAGaaCCCGcCGGGGg -3'
miRNA:   3'- -CUGCu---GC-GCUCCUCgcGGGCaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 120349 0.69 0.655675
Target:  5'- cGGCGAUGuCGucGGaGAGCGCCCGg-AGGAc -3'
miRNA:   3'- -CUGCUGC-GC--UC-CUCGCGGGCagUCCU- -5'
15880 5' -60.5 NC_004065.1 + 197351 0.68 0.740495
Target:  5'- aGGCGcuGCGCGAGaaccGCGCCCGcgAGGAa -3'
miRNA:   3'- -CUGC--UGCGCUCcu--CGCGGGCagUCCU- -5'
15880 5' -60.5 NC_004065.1 + 99211 0.68 0.740495
Target:  5'- aGACGGC-CGAGGcGCGCUC--CAGGAa -3'
miRNA:   3'- -CUGCUGcGCUCCuCGCGGGcaGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 89985 0.66 0.842142
Target:  5'- gGACGACGaCG-GGAGCGaaCCCGaC-GGAg -3'
miRNA:   3'- -CUGCUGC-GCuCCUCGC--GGGCaGuCCU- -5'
15880 5' -60.5 NC_004065.1 + 58618 0.7 0.607624
Target:  5'- cGACGcGCGCGGcGGAGuCGCCgGUCucgcGGAu -3'
miRNA:   3'- -CUGC-UGCGCU-CCUC-GCGGgCAGu---CCU- -5'
15880 5' -60.5 NC_004065.1 + 74132 0.66 0.813672
Target:  5'- cGAgGACGuCGAGGcgGGUGCCCGggccgagaaccccgCAGGc -3'
miRNA:   3'- -CUgCUGC-GCUCC--UCGCGGGCa-------------GUCCu -5'
15880 5' -60.5 NC_004065.1 + 24542 0.68 0.740495
Target:  5'- cGACGACGgcaGcGGAGacgaGCCCcucGUCGGGAu -3'
miRNA:   3'- -CUGCUGCg--CuCCUCg---CGGG---CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 53759 0.67 0.758621
Target:  5'- uGACGAugcagaucacUGCGAGGAcggagGCGUaaaccaCGUCGGGAg -3'
miRNA:   3'- -CUGCU----------GCGCUCCU-----CGCGg-----GCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 229672 0.66 0.826577
Target:  5'- gGugGGCGuCGGGGcgcGCGUCCGcUCGGcGAu -3'
miRNA:   3'- -CugCUGC-GCUCCu--CGCGGGC-AGUC-CU- -5'
15880 5' -60.5 NC_004065.1 + 108389 0.66 0.829741
Target:  5'- cGACGACGCGcucaacgccauccucGGGGGCauccuGCCCuacCGGGGg -3'
miRNA:   3'- -CUGCUGCGC---------------UCCUCG-----CGGGca-GUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.