miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15880 5' -60.5 NC_004065.1 + 58618 0.7 0.607624
Target:  5'- cGACGcGCGCGGcGGAGuCGCCgGUCucgcGGAu -3'
miRNA:   3'- -CUGC-UGCGCU-CCUC-GCGGgCAGu---CCU- -5'
15880 5' -60.5 NC_004065.1 + 148582 0.7 0.607624
Target:  5'- -cCG-UGCGGGGccuGGUGCCgGUCAGGAa -3'
miRNA:   3'- cuGCuGCGCUCC---UCGCGGgCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 184896 0.7 0.598037
Target:  5'- aGAgGAuCGgGAGcGGGCGCCCGgguggcUCGGGAg -3'
miRNA:   3'- -CUgCU-GCgCUC-CUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 74920 0.73 0.442552
Target:  5'- aGGCGACGCagGGGGAGCugGCCUgGUUGGGAa -3'
miRNA:   3'- -CUGCUGCG--CUCCUCG--CGGG-CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 139319 0.74 0.409252
Target:  5'- aACGACgGCGAGGAGCGCaggaaaCGcaugCGGGAg -3'
miRNA:   3'- cUGCUG-CGCUCCUCGCGg-----GCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 24542 0.68 0.740495
Target:  5'- cGACGACGgcaGcGGAGacgaGCCCcucGUCGGGAu -3'
miRNA:   3'- -CUGCUGCg--CuCCUCg---CGGG---CAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 53759 0.67 0.758621
Target:  5'- uGACGAugcagaucacUGCGAGGAcggagGCGUaaaccaCGUCGGGAg -3'
miRNA:   3'- -CUGCU----------GCGCUCCU-----CGCGg-----GCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 108389 0.66 0.829741
Target:  5'- cGACGACGCGcucaacgccauccucGGGGGCauccuGCCCuacCGGGGg -3'
miRNA:   3'- -CUGCUGCGC---------------UCCUCG-----CGGGca-GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 229672 0.66 0.826577
Target:  5'- gGugGGCGuCGGGGcgcGCGUCCGcUCGGcGAu -3'
miRNA:   3'- -CugCUGC-GCUCCu--CGCGGGC-AGUC-CU- -5'
15880 5' -60.5 NC_004065.1 + 74132 0.66 0.813672
Target:  5'- cGAgGACGuCGAGGcgGGUGCCCGggccgagaaccccgCAGGc -3'
miRNA:   3'- -CUgCUGC-GCUCC--UCGCGGGCa-------------GUCCu -5'
15880 5' -60.5 NC_004065.1 + 200308 0.66 0.810387
Target:  5'- cGGCGgaACGCaggcaGAGGuaccaGCCCGUCGGGGc -3'
miRNA:   3'- -CUGC--UGCG-----CUCCucg--CGGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 127223 0.66 0.810387
Target:  5'- cGGCGGcCGCGAGGAucGgGCgCGguggCGGGGa -3'
miRNA:   3'- -CUGCU-GCGCUCCU--CgCGgGCa---GUCCU- -5'
15880 5' -60.5 NC_004065.1 + 128905 0.66 0.810387
Target:  5'- uGCGACGCGAGGgcgAGgGCuCCGUUuacGGc -3'
miRNA:   3'- cUGCUGCGCUCC---UCgCG-GGCAGu--CCu -5'
15880 5' -60.5 NC_004065.1 + 115065 0.66 0.810387
Target:  5'- cGGCGcGCGCGAGGAcGCGgCCUcgGUCGGc- -3'
miRNA:   3'- -CUGC-UGCGCUCCU-CGC-GGG--CAGUCcu -5'
15880 5' -60.5 NC_004065.1 + 33308 0.66 0.807908
Target:  5'- cGGCGACGCGAacguaauucuccucGaagaGGCGgauCCCGUCGGGGu -3'
miRNA:   3'- -CUGCUGCGCU--------------Cc---UCGC---GGGCAGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 60558 0.66 0.800396
Target:  5'- aGACGACGgagacgcCGGguccgcacacggcGGGGCGCCCGauguucUCGGGGa -3'
miRNA:   3'- -CUGCUGC-------GCU-------------CCUCGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 110195 0.67 0.793626
Target:  5'- cGCGACGCGccGc-CGCCCGUCgagaGGGAa -3'
miRNA:   3'- cUGCUGCGCucCucGCGGGCAG----UCCU- -5'
15880 5' -60.5 NC_004065.1 + 135391 0.67 0.776352
Target:  5'- -gUGACGCGccGGccGCGCCCGaccccgUCAGGAg -3'
miRNA:   3'- cuGCUGCGCu-CCu-CGCGGGC------AGUCCU- -5'
15880 5' -60.5 NC_004065.1 + 78452 0.67 0.766652
Target:  5'- cGACGACGguCGAGGAugaugaugucuccGCGCCgCGUCAa-- -3'
miRNA:   3'- -CUGCUGC--GCUCCU-------------CGCGG-GCAGUccu -5'
15880 5' -60.5 NC_004065.1 + 67763 0.67 0.766652
Target:  5'- cGACGGCGUGAcgaacggcGcGGGCGCCCagacuucguccaaGUCGGGc -3'
miRNA:   3'- -CUGCUGCGCU--------C-CUCGCGGG-------------CAGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.