Results 61 - 63 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15880 | 5' | -60.5 | NC_004065.1 | + | 135391 | 0.67 | 0.776352 |
Target: 5'- -gUGACGCGccGGccGCGCCCGaccccgUCAGGAg -3' miRNA: 3'- cuGCUGCGCu-CCu-CGCGGGC------AGUCCU- -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 78452 | 0.67 | 0.766652 |
Target: 5'- cGACGACGguCGAGGAugaugaugucuccGCGCCgCGUCAa-- -3' miRNA: 3'- -CUGCUGC--GCUCCU-------------CGCGG-GCAGUccu -5' |
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15880 | 5' | -60.5 | NC_004065.1 | + | 30874 | 0.76 | 0.305831 |
Target: 5'- cGACGGCGgGuucGAGCGCCCG-CAGGGc -3' miRNA: 3'- -CUGCUGCgCuc-CUCGCGGGCaGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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