miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15881 5' -55.3 NC_004065.1 + 22171 0.66 0.974334
Target:  5'- uGAGGGgCGGUGggUUGagaUCGGuCUCUc -3'
miRNA:   3'- gCUCUCgGCCACuuGGC---AGUCuGAGA- -5'
15881 5' -55.3 NC_004065.1 + 187077 0.66 0.974334
Target:  5'- aGAGAcCUGGUG-ACCGUCAGGa--- -3'
miRNA:   3'- gCUCUcGGCCACuUGGCAGUCUgaga -5'
15881 5' -55.3 NC_004065.1 + 124352 0.66 0.971698
Target:  5'- cCGAGuAGaaCCGGUGGaaggggaucACCGUCAGguACUCc -3'
miRNA:   3'- -GCUC-UC--GGCCACU---------UGGCAGUC--UGAGa -5'
15881 5' -55.3 NC_004065.1 + 149708 0.66 0.971698
Target:  5'- gGGGGGCCGcGgccGcGCCGgcccUCGGACUCa -3'
miRNA:   3'- gCUCUCGGC-Ca--CuUGGC----AGUCUGAGa -5'
15881 5' -55.3 NC_004065.1 + 96908 0.66 0.971698
Target:  5'- uCGAaGGCgauuugcugcugUGGUG-ACCGUUAGACUCg -3'
miRNA:   3'- -GCUcUCG------------GCCACuUGGCAGUCUGAGa -5'
15881 5' -55.3 NC_004065.1 + 136333 0.66 0.965854
Target:  5'- -aGGAGCCGGUGggUCaGUUcGGCUg- -3'
miRNA:   3'- gcUCUCGGCCACuuGG-CAGuCUGAga -5'
15881 5' -55.3 NC_004065.1 + 192710 0.66 0.965854
Target:  5'- aCGGaAGCUGGUGccGACCGg-GGGCUCUu -3'
miRNA:   3'- -GCUcUCGGCCAC--UUGGCagUCUGAGA- -5'
15881 5' -55.3 NC_004065.1 + 154235 0.66 0.965854
Target:  5'- uGGGAGCCGaGgccGCCGUgAGAcCUCg -3'
miRNA:   3'- gCUCUCGGC-CacuUGGCAgUCU-GAGa -5'
15881 5' -55.3 NC_004065.1 + 213802 0.67 0.959208
Target:  5'- aCGAGAGaucgaaCGGU--ACCGUCAGAUgUCg -3'
miRNA:   3'- -GCUCUCg-----GCCAcuUGGCAGUCUG-AGa -5'
15881 5' -55.3 NC_004065.1 + 115794 0.67 0.955572
Target:  5'- cCGGGcacggaaacugcGGCCGGUGucaGACCGUgAGACg-- -3'
miRNA:   3'- -GCUC------------UCGGCCAC---UUGGCAgUCUGaga -5'
15881 5' -55.3 NC_004065.1 + 200471 0.67 0.951722
Target:  5'- gCGGGAGCgCGGccUGAuGCCGaCAGGcCUCUg -3'
miRNA:   3'- -GCUCUCG-GCC--ACU-UGGCaGUCU-GAGA- -5'
15881 5' -55.3 NC_004065.1 + 26145 0.67 0.947655
Target:  5'- aCGAGAGCCGG-GGucugcgugccaGCCGUCcuAUUCc -3'
miRNA:   3'- -GCUCUCGGCCaCU-----------UGGCAGucUGAGa -5'
15881 5' -55.3 NC_004065.1 + 92295 0.67 0.943368
Target:  5'- aCGuGuGCCGGUGuuugacacACCGUUAGACg-- -3'
miRNA:   3'- -GCuCuCGGCCACu-------UGGCAGUCUGaga -5'
15881 5' -55.3 NC_004065.1 + 137252 0.68 0.918567
Target:  5'- cCGuAG-GCCGGUGAACCaGUC-GACUg- -3'
miRNA:   3'- -GC-UCuCGGCCACUUGG-CAGuCUGAga -5'
15881 5' -55.3 NC_004065.1 + 176825 0.68 0.918567
Target:  5'- aGAGAGUCGGUGAGaugaGUgGGACa-- -3'
miRNA:   3'- gCUCUCGGCCACUUgg--CAgUCUGaga -5'
15881 5' -55.3 NC_004065.1 + 101709 0.68 0.912931
Target:  5'- aGGGGGaacaGGUGGugcuCCGUCGGugUCUc -3'
miRNA:   3'- gCUCUCgg--CCACUu---GGCAGUCugAGA- -5'
15881 5' -55.3 NC_004065.1 + 29475 0.68 0.912931
Target:  5'- uCGAGAGCgCGGUGcuCUugGUCAGGCg-- -3'
miRNA:   3'- -GCUCUCG-GCCACuuGG--CAGUCUGaga -5'
15881 5' -55.3 NC_004065.1 + 42640 0.69 0.90707
Target:  5'- cCGAGAGaCGGUGGACCGU-GGAUc-- -3'
miRNA:   3'- -GCUCUCgGCCACUUGGCAgUCUGaga -5'
15881 5' -55.3 NC_004065.1 + 68124 0.69 0.900987
Target:  5'- uCGAGAGCCuGaUGGGuCUGUCGGACgagCUg -3'
miRNA:   3'- -GCUCUCGGcC-ACUU-GGCAGUCUGa--GA- -5'
15881 5' -55.3 NC_004065.1 + 136425 0.69 0.900987
Target:  5'- uGGGGGcCCGGUGAGCCGaggucggUAGGCg-- -3'
miRNA:   3'- gCUCUC-GGCCACUUGGCa------GUCUGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.