miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15882 5' -55.2 NC_004065.1 + 150146 0.66 0.961139
Target:  5'- aUCGGGUUgguguucagCAGCUGGCAGaucuucuuguggAUGcGCAGc -3'
miRNA:   3'- -GGUCCAGa--------GUCGACCGUCa-----------UAC-CGUC- -5'
15882 5' -55.2 NC_004065.1 + 38892 0.66 0.954556
Target:  5'- uCUGGGUUUCAGCaUGGaggucgacgaCGGUAgGGCGGu -3'
miRNA:   3'- -GGUCCAGAGUCG-ACC----------GUCAUaCCGUC- -5'
15882 5' -55.2 NC_004065.1 + 121468 0.66 0.954556
Target:  5'- aCCAGGUCggUCGGCgcguccgcgGGCGugaagGUGGCGa -3'
miRNA:   3'- -GGUCCAG--AGUCGa--------CCGUca---UACCGUc -5'
15882 5' -55.2 NC_004065.1 + 195103 0.66 0.954556
Target:  5'- cCCAGGggCgUCAGCUcgccGGCGGUGUcgccGCAGc -3'
miRNA:   3'- -GGUCCa-G-AGUCGA----CCGUCAUAc---CGUC- -5'
15882 5' -55.2 NC_004065.1 + 116307 0.67 0.95059
Target:  5'- uCCgAGGUgUCGGCgucGGCGGc--GGCAGc -3'
miRNA:   3'- -GG-UCCAgAGUCGa--CCGUCauaCCGUC- -5'
15882 5' -55.2 NC_004065.1 + 62350 0.67 0.932457
Target:  5'- gCUGGGUCgUCGGUUuucgacGGCGGUGgcGGCGGg -3'
miRNA:   3'- -GGUCCAG-AGUCGA------CCGUCAUa-CCGUC- -5'
15882 5' -55.2 NC_004065.1 + 52634 0.68 0.924168
Target:  5'- cUCAGGUCgccaccgaCGaacaccuuggccgccGCUGGCGGUggcgGUGGCGGa -3'
miRNA:   3'- -GGUCCAGa-------GU---------------CGACCGUCA----UACCGUC- -5'
15882 5' -55.2 NC_004065.1 + 223944 0.68 0.912971
Target:  5'- aCCGGGUCucgUCAGC-GGCAGggucaccaggacggAUGGCc- -3'
miRNA:   3'- -GGUCCAG---AGUCGaCCGUCa-------------UACCGuc -5'
15882 5' -55.2 NC_004065.1 + 223001 0.68 0.904584
Target:  5'- aCCGGGUUUCAcgUGGCAGaucacGGCGGc -3'
miRNA:   3'- -GGUCCAGAGUcgACCGUCaua--CCGUC- -5'
15882 5' -55.2 NC_004065.1 + 40492 0.7 0.848392
Target:  5'- uCCAGGccgCUCgcgGGCuauagcaauuUGGCAGUGUGGUAc -3'
miRNA:   3'- -GGUCCa--GAG---UCG----------ACCGUCAUACCGUc -5'
15882 5' -55.2 NC_004065.1 + 74854 0.7 0.832325
Target:  5'- gCAGGUUgaggCGGC-GGUGGUAgacgGGCAGg -3'
miRNA:   3'- gGUCCAGa---GUCGaCCGUCAUa---CCGUC- -5'
15882 5' -55.2 NC_004065.1 + 24447 0.71 0.770918
Target:  5'- cUCGGGa---GGCUGGCGGUAguggGGCAGc -3'
miRNA:   3'- -GGUCCagagUCGACCGUCAUa---CCGUC- -5'
15882 5' -55.2 NC_004065.1 + 171944 0.72 0.752164
Target:  5'- -aGGGUCUCGcGCaaGGCGGgcgGUGGCGGc -3'
miRNA:   3'- ggUCCAGAGU-CGa-CCGUCa--UACCGUC- -5'
15882 5' -55.2 NC_004065.1 + 221973 0.73 0.683748
Target:  5'- aCCGuGGUCgUUGGuCUGGUAGUcgGGCGGa -3'
miRNA:   3'- -GGU-CCAG-AGUC-GACCGUCAuaCCGUC- -5'
15882 5' -55.2 NC_004065.1 + 49418 1.1 0.004378
Target:  5'- gCCAGGUCUCAGCUGGCAGUAUGGCAGc -3'
miRNA:   3'- -GGUCCAGAGUCGACCGUCAUACCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.