Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15882 | 5' | -55.2 | NC_004065.1 | + | 24447 | 0.71 | 0.770918 |
Target: 5'- cUCGGGa---GGCUGGCGGUAguggGGCAGc -3' miRNA: 3'- -GGUCCagagUCGACCGUCAUa---CCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 38892 | 0.66 | 0.954556 |
Target: 5'- uCUGGGUUUCAGCaUGGaggucgacgaCGGUAgGGCGGu -3' miRNA: 3'- -GGUCCAGAGUCG-ACC----------GUCAUaCCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 40492 | 0.7 | 0.848392 |
Target: 5'- uCCAGGccgCUCgcgGGCuauagcaauuUGGCAGUGUGGUAc -3' miRNA: 3'- -GGUCCa--GAG---UCG----------ACCGUCAUACCGUc -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 49418 | 1.1 | 0.004378 |
Target: 5'- gCCAGGUCUCAGCUGGCAGUAUGGCAGc -3' miRNA: 3'- -GGUCCAGAGUCGACCGUCAUACCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 52634 | 0.68 | 0.924168 |
Target: 5'- cUCAGGUCgccaccgaCGaacaccuuggccgccGCUGGCGGUggcgGUGGCGGa -3' miRNA: 3'- -GGUCCAGa-------GU---------------CGACCGUCA----UACCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 62350 | 0.67 | 0.932457 |
Target: 5'- gCUGGGUCgUCGGUUuucgacGGCGGUGgcGGCGGg -3' miRNA: 3'- -GGUCCAG-AGUCGA------CCGUCAUa-CCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 74854 | 0.7 | 0.832325 |
Target: 5'- gCAGGUUgaggCGGC-GGUGGUAgacgGGCAGg -3' miRNA: 3'- gGUCCAGa---GUCGaCCGUCAUa---CCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 116307 | 0.67 | 0.95059 |
Target: 5'- uCCgAGGUgUCGGCgucGGCGGc--GGCAGc -3' miRNA: 3'- -GG-UCCAgAGUCGa--CCGUCauaCCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 121468 | 0.66 | 0.954556 |
Target: 5'- aCCAGGUCggUCGGCgcguccgcgGGCGugaagGUGGCGa -3' miRNA: 3'- -GGUCCAG--AGUCGa--------CCGUca---UACCGUc -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 150146 | 0.66 | 0.961139 |
Target: 5'- aUCGGGUUgguguucagCAGCUGGCAGaucuucuuguggAUGcGCAGc -3' miRNA: 3'- -GGUCCAGa--------GUCGACCGUCa-----------UAC-CGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 171944 | 0.72 | 0.752164 |
Target: 5'- -aGGGUCUCGcGCaaGGCGGgcgGUGGCGGc -3' miRNA: 3'- ggUCCAGAGU-CGa-CCGUCa--UACCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 195103 | 0.66 | 0.954556 |
Target: 5'- cCCAGGggCgUCAGCUcgccGGCGGUGUcgccGCAGc -3' miRNA: 3'- -GGUCCa-G-AGUCGA----CCGUCAUAc---CGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 221973 | 0.73 | 0.683748 |
Target: 5'- aCCGuGGUCgUUGGuCUGGUAGUcgGGCGGa -3' miRNA: 3'- -GGU-CCAG-AGUC-GACCGUCAuaCCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 223001 | 0.68 | 0.904584 |
Target: 5'- aCCGGGUUUCAcgUGGCAGaucacGGCGGc -3' miRNA: 3'- -GGUCCAGAGUcgACCGUCaua--CCGUC- -5' |
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15882 | 5' | -55.2 | NC_004065.1 | + | 223944 | 0.68 | 0.912971 |
Target: 5'- aCCGGGUCucgUCAGC-GGCAGggucaccaggacggAUGGCc- -3' miRNA: 3'- -GGUCCAG---AGUCGaCCGUCa-------------UACCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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