Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15884 | 3' | -46 | NC_004065.1 | + | 214418 | 0.66 | 0.999999 |
Target: 5'- gGUGACCUU--GACGGaugAUggUUCCGa -3' miRNA: 3'- gCACUGGAAauUUGCCa--UGaaAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 204688 | 0.66 | 0.999999 |
Target: 5'- uGUGACCUUguuuuucagUAGAuCGGUG---UCCCGu -3' miRNA: 3'- gCACUGGAA---------AUUU-GCCAUgaaAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 182852 | 0.8 | 0.88787 |
Target: 5'- -uUGGCUcgaGAACGGUACUUUCCCAu -3' miRNA: 3'- gcACUGGaaaUUUGCCAUGAAAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 151018 | 0.67 | 0.999992 |
Target: 5'- uCGcUGGCCUUgAAGCGGUuc--UCCCGc -3' miRNA: 3'- -GC-ACUGGAAaUUUGCCAugaaAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 147157 | 0.66 | 0.999997 |
Target: 5'- cCGUGGCCa-UGAGCGGcgUGCUcUUCgCCAc -3' miRNA: 3'- -GCACUGGaaAUUUGCC--AUGA-AAG-GGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 141710 | 0.68 | 0.999961 |
Target: 5'- uGUGACUUUUcgAAACGGUuagcgacaaggACgcUCCCGa -3' miRNA: 3'- gCACUGGAAA--UUUGCCA-----------UGaaAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 92304 | 0.67 | 0.999994 |
Target: 5'- gGUGuuugacacACCgUUAGACGGUACUgaCUCAa -3' miRNA: 3'- gCAC--------UGGaAAUUUGCCAUGAaaGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 63305 | 0.7 | 0.999749 |
Target: 5'- -cUGAUCUcau--CGGUGCUUUCCCc -3' miRNA: 3'- gcACUGGAaauuuGCCAUGAAAGGGu -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 48126 | 0.73 | 0.996618 |
Target: 5'- gGUGGCCUgcug-UGGUGCUcuuUUCCCGu -3' miRNA: 3'- gCACUGGAaauuuGCCAUGA---AAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 47135 | 1.11 | 0.033255 |
Target: 5'- aCGUGACCUUUAAACGGUACUUUCCCAu -3' miRNA: 3'- -GCACUGGAAAUUUGCCAUGAAAGGGU- -5' |
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15884 | 3' | -46 | NC_004065.1 | + | 25361 | 0.69 | 0.999847 |
Target: 5'- --cGACCaagcgGAACGGUGCUauauucUCCCAg -3' miRNA: 3'- gcaCUGGaaa--UUUGCCAUGAa-----AGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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