miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15884 5' -51.4 NC_004065.1 + 36937 0.66 0.997041
Target:  5'- --aGGGAGAGauccaggucccgauCCGUgUCUCGAGaCCAu -3'
miRNA:   3'- uuaCCCUUUCau------------GGCA-AGAGCUC-GGU- -5'
15884 5' -51.4 NC_004065.1 + 28571 0.66 0.996992
Target:  5'- --cGGGGAGcGU-CCGg-CUCGAGCCc -3'
miRNA:   3'- uuaCCCUUU-CAuGGCaaGAGCUCGGu -5'
15884 5' -51.4 NC_004065.1 + 3274 0.66 0.996992
Target:  5'- -cUGGGguGGUGuuGUgaCUCGAGCa- -3'
miRNA:   3'- uuACCCuuUCAUggCAa-GAGCUCGgu -5'
15884 5' -51.4 NC_004065.1 + 171252 0.66 0.996992
Target:  5'- -cUGGGAAAccucauGUACaUGacCUCGAGCCGc -3'
miRNA:   3'- uuACCCUUU------CAUG-GCaaGAGCUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 195195 0.66 0.995176
Target:  5'- --cGGGAucAGGUACCaGUUCUcCGGGUa- -3'
miRNA:   3'- uuaCCCU--UUCAUGG-CAAGA-GCUCGgu -5'
15884 5' -51.4 NC_004065.1 + 204657 0.66 0.99432
Target:  5'- -cUGGGAGaauauAGcACCGUUCcgcuuggUCGAGUCAa -3'
miRNA:   3'- uuACCCUU-----UCaUGGCAAG-------AGCUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 223069 0.67 0.992557
Target:  5'- --aGGGAGA--ACCGUcgucgugcguuUCUUGGGCCGu -3'
miRNA:   3'- uuaCCCUUUcaUGGCA-----------AGAGCUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 30139 0.67 0.990256
Target:  5'- --cGGGGAGGgcgACCGgccgCUCGuGCUg -3'
miRNA:   3'- uuaCCCUUUCa--UGGCaa--GAGCuCGGu -5'
15884 5' -51.4 NC_004065.1 + 94264 0.67 0.990256
Target:  5'- -------cGGUGCCGUUCaCGAGCCAg -3'
miRNA:   3'- uuacccuuUCAUGGCAAGaGCUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 190990 0.67 0.988913
Target:  5'- --cGGGGucacgAAGUACUGUUCgcccagcaGGGCCAg -3'
miRNA:   3'- uuaCCCU-----UUCAUGGCAAGag------CUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 2977 0.68 0.98743
Target:  5'- -cUGGGAAAGcgACC--UCUCGGcGCCGa -3'
miRNA:   3'- uuACCCUUUCa-UGGcaAGAGCU-CGGU- -5'
15884 5' -51.4 NC_004065.1 + 119613 0.68 0.985104
Target:  5'- -cUGGGAGuucuGUGCCGggacggggagCGAGCCGa -3'
miRNA:   3'- uuACCCUUu---CAUGGCaaga------GCUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 146573 0.69 0.966403
Target:  5'- --cGGGuAAGGUGCCG--CUCGuGCCGg -3'
miRNA:   3'- uuaCCC-UUUCAUGGCaaGAGCuCGGU- -5'
15884 5' -51.4 NC_004065.1 + 89326 0.69 0.966403
Target:  5'- --cGGGGAGGUAcgcacuacCCG-UCUCGAGCa- -3'
miRNA:   3'- uuaCCCUUUCAU--------GGCaAGAGCUCGgu -5'
15884 5' -51.4 NC_004065.1 + 82810 0.7 0.96307
Target:  5'- gGGUGGGGAAGUACUucugCUCGucgggaAGCCGg -3'
miRNA:   3'- -UUACCCUUUCAUGGcaa-GAGC------UCGGU- -5'
15884 5' -51.4 NC_004065.1 + 4390 0.7 0.96307
Target:  5'- --cGGGAgccgGAGUGCUGUUCggagCGguGGCCAc -3'
miRNA:   3'- uuaCCCU----UUCAUGGCAAGa---GC--UCGGU- -5'
15884 5' -51.4 NC_004065.1 + 35412 0.7 0.95727
Target:  5'- cGUGGGAGAGUACCGggacgacggcuucgUCuUCGAGguguCCAc -3'
miRNA:   3'- uUACCCUUUCAUGGCa-------------AG-AGCUC----GGU- -5'
15884 5' -51.4 NC_004065.1 + 53465 0.7 0.955728
Target:  5'- cGUGGGAAugauggcucaccAGccuCCGUUCUCGGGCg- -3'
miRNA:   3'- uUACCCUU------------UCau-GGCAAGAGCUCGgu -5'
15884 5' -51.4 NC_004065.1 + 43769 0.72 0.904603
Target:  5'- --aGGcGAAGGUACCuGUUCggGGGCCAg -3'
miRNA:   3'- uuaCC-CUUUCAUGG-CAAGagCUCGGU- -5'
15884 5' -51.4 NC_004065.1 + 182886 0.72 0.884518
Target:  5'- uAUGGGAAAGUACCGUUUaaaGGUCAc -3'
miRNA:   3'- uUACCCUUUCAUGGCAAGagcUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.