Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15884 | 5' | -51.4 | NC_004065.1 | + | 47170 | 1.07 | 0.014793 |
Target: 5'- uAAUGGGAAAGUACCGUUCUCGAGCCAa -3' miRNA: 3'- -UUACCCUUUCAUGGCAAGAGCUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 195820 | 0.73 | 0.877356 |
Target: 5'- gGGUGGGAcGGUGagaCGgcgCUCGAGCCc -3' miRNA: 3'- -UUACCCUuUCAUg--GCaa-GAGCUCGGu -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 182886 | 0.72 | 0.884518 |
Target: 5'- uAUGGGAAAGUACCGUUUaaaGGUCAc -3' miRNA: 3'- uUACCCUUUCAUGGCAAGagcUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 43769 | 0.72 | 0.904603 |
Target: 5'- --aGGcGAAGGUACCuGUUCggGGGCCAg -3' miRNA: 3'- uuaCC-CUUUCAUGG-CAAGagCUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 53465 | 0.7 | 0.955728 |
Target: 5'- cGUGGGAAugauggcucaccAGccuCCGUUCUCGGGCg- -3' miRNA: 3'- uUACCCUU------------UCau-GGCAAGAGCUCGgu -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 35412 | 0.7 | 0.95727 |
Target: 5'- cGUGGGAGAGUACCGggacgacggcuucgUCuUCGAGguguCCAc -3' miRNA: 3'- uUACCCUUUCAUGGCa-------------AG-AGCUC----GGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 82810 | 0.7 | 0.96307 |
Target: 5'- gGGUGGGGAAGUACUucugCUCGucgggaAGCCGg -3' miRNA: 3'- -UUACCCUUUCAUGGcaa-GAGC------UCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 4390 | 0.7 | 0.96307 |
Target: 5'- --cGGGAgccgGAGUGCUGUUCggagCGguGGCCAc -3' miRNA: 3'- uuaCCCU----UUCAUGGCAAGa---GC--UCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 89326 | 0.69 | 0.966403 |
Target: 5'- --cGGGGAGGUAcgcacuacCCG-UCUCGAGCa- -3' miRNA: 3'- uuaCCCUUUCAU--------GGCaAGAGCUCGgu -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 146573 | 0.69 | 0.966403 |
Target: 5'- --cGGGuAAGGUGCCG--CUCGuGCCGg -3' miRNA: 3'- uuaCCC-UUUCAUGGCaaGAGCuCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 119613 | 0.68 | 0.985104 |
Target: 5'- -cUGGGAGuucuGUGCCGggacggggagCGAGCCGa -3' miRNA: 3'- uuACCCUUu---CAUGGCaaga------GCUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 2977 | 0.68 | 0.98743 |
Target: 5'- -cUGGGAAAGcgACC--UCUCGGcGCCGa -3' miRNA: 3'- uuACCCUUUCa-UGGcaAGAGCU-CGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 190990 | 0.67 | 0.988913 |
Target: 5'- --cGGGGucacgAAGUACUGUUCgcccagcaGGGCCAg -3' miRNA: 3'- uuaCCCU-----UUCAUGGCAAGag------CUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 30139 | 0.67 | 0.990256 |
Target: 5'- --cGGGGAGGgcgACCGgccgCUCGuGCUg -3' miRNA: 3'- uuaCCCUUUCa--UGGCaa--GAGCuCGGu -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 94264 | 0.67 | 0.990256 |
Target: 5'- -------cGGUGCCGUUCaCGAGCCAg -3' miRNA: 3'- uuacccuuUCAUGGCAAGaGCUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 223069 | 0.67 | 0.992557 |
Target: 5'- --aGGGAGA--ACCGUcgucgugcguuUCUUGGGCCGu -3' miRNA: 3'- uuaCCCUUUcaUGGCA-----------AGAGCUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 204657 | 0.66 | 0.99432 |
Target: 5'- -cUGGGAGaauauAGcACCGUUCcgcuuggUCGAGUCAa -3' miRNA: 3'- uuACCCUU-----UCaUGGCAAG-------AGCUCGGU- -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 195195 | 0.66 | 0.995176 |
Target: 5'- --cGGGAucAGGUACCaGUUCUcCGGGUa- -3' miRNA: 3'- uuaCCCU--UUCAUGG-CAAGA-GCUCGgu -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 3274 | 0.66 | 0.996992 |
Target: 5'- -cUGGGguGGUGuuGUgaCUCGAGCa- -3' miRNA: 3'- uuACCCuuUCAUggCAa-GAGCUCGgu -5' |
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15884 | 5' | -51.4 | NC_004065.1 | + | 171252 | 0.66 | 0.996992 |
Target: 5'- -cUGGGAAAccucauGUACaUGacCUCGAGCCGc -3' miRNA: 3'- uuACCCUUU------CAUG-GCaaGAGCUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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