miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 3' -51.3 NC_004065.1 + 120156 0.66 0.998017
Target:  5'- cGACGCAcaAUuccgaGUGccaccUGGGUgAGGGGaGCg -3'
miRNA:   3'- aCUGCGU--UAua---CAU-----ACCCA-UCCCC-CG- -5'
15885 3' -51.3 NC_004065.1 + 62374 0.66 0.998017
Target:  5'- gGugGCGGcggggGUG-GUGGcGgcGGGGGUg -3'
miRNA:   3'- aCugCGUUa----UACaUACC-CauCCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 108316 0.66 0.997946
Target:  5'- cUGACGCccgcaagcGUGcGGGgcgacGGGGGCa -3'
miRNA:   3'- -ACUGCGuuaua---CAUaCCCau---CCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 229658 0.66 0.997644
Target:  5'- cGGCgGCAGUGgcagGUGGGcgucGGGGCg -3'
miRNA:   3'- aCUG-CGUUAUaca-UACCCauc-CCCCG- -5'
15885 3' -51.3 NC_004065.1 + 215336 0.66 0.997644
Target:  5'- gGugGCGGUGUGgauccguUGGGUGGuGGaGUc -3'
miRNA:   3'- aCugCGUUAUACau-----ACCCAUC-CCcCG- -5'
15885 3' -51.3 NC_004065.1 + 115751 0.66 0.997215
Target:  5'- aGACGCAGUcgGcc-GGGaAGcGGaGGCg -3'
miRNA:   3'- aCUGCGUUAuaCauaCCCaUC-CC-CCG- -5'
15885 3' -51.3 NC_004065.1 + 86199 0.66 0.997215
Target:  5'- aGGCGUAGgccAUGUuaacguuauaGGGcAGGGGGUg -3'
miRNA:   3'- aCUGCGUUa--UACAua--------CCCaUCCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 167589 0.66 0.997215
Target:  5'- cGACGUc---UGaUGUGGGUgcuGGcGGGGCu -3'
miRNA:   3'- aCUGCGuuauAC-AUACCCA---UC-CCCCG- -5'
15885 3' -51.3 NC_004065.1 + 185469 0.66 0.99616
Target:  5'- gGugGUggUG-GUGcGGGUcGGGaGGCa -3'
miRNA:   3'- aCugCGuuAUaCAUaCCCAuCCC-CCG- -5'
15885 3' -51.3 NC_004065.1 + 6352 0.67 0.992046
Target:  5'- -cGCGUGcgGUGUGagcaguaucUGGGUGacGGGGGUa -3'
miRNA:   3'- acUGCGUuaUACAU---------ACCCAU--CCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 137798 0.67 0.992046
Target:  5'- -uGCGUAGUGUGUGUcGGGgauGuGGGCc -3'
miRNA:   3'- acUGCGUUAUACAUA-CCCau-CcCCCG- -5'
15885 3' -51.3 NC_004065.1 + 26369 0.68 0.989644
Target:  5'- cUGGCGCuGAUAUGcGUGGuGUGGGuguguuGGCg -3'
miRNA:   3'- -ACUGCG-UUAUACaUACC-CAUCCc-----CCG- -5'
15885 3' -51.3 NC_004065.1 + 143313 0.68 0.988248
Target:  5'- cGGgGCAGgagGggaagagGGGgcGGGGGCg -3'
miRNA:   3'- aCUgCGUUauaCaua----CCCauCCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 136765 0.68 0.985023
Target:  5'- gGAUGCGGgg-GgagagcGUGGGggaugcgGGGGGGCc -3'
miRNA:   3'- aCUGCGUUauaCa-----UACCCa------UCCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 91126 0.68 0.985023
Target:  5'- aGGCcgaGUAGUcgGUGaugGGGUcguagaagacGGGGGGCa -3'
miRNA:   3'- aCUG---CGUUAuaCAUa--CCCA----------UCCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 114912 0.69 0.983176
Target:  5'- gGugGCuccg-Gg--GGGUGGGGcGGCa -3'
miRNA:   3'- aCugCGuuauaCauaCCCAUCCC-CCG- -5'
15885 3' -51.3 NC_004065.1 + 61895 0.69 0.983176
Target:  5'- aUGAC-CGucAUcGUcgGGGUcGGGGGGCg -3'
miRNA:   3'- -ACUGcGUuaUA-CAuaCCCA-UCCCCCG- -5'
15885 3' -51.3 NC_004065.1 + 95176 0.69 0.981163
Target:  5'- gGGgGUAAUAaggaauaGUGUGuGGUGGGGGGa -3'
miRNA:   3'- aCUgCGUUAUa------CAUAC-CCAUCCCCCg -5'
15885 3' -51.3 NC_004065.1 + 67652 0.69 0.978974
Target:  5'- cGACGCGucggugAUGUcgGGG-AGcGGcGGCg -3'
miRNA:   3'- aCUGCGUua----UACAuaCCCaUC-CC-CCG- -5'
15885 3' -51.3 NC_004065.1 + 197466 0.69 0.974041
Target:  5'- aUGcCGCug-GUGggGUGGG-GGGGGGUg -3'
miRNA:   3'- -ACuGCGuuaUACa-UACCCaUCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.