Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 115751 | 0.66 | 0.997215 |
|
Target: 5'- aGACGCAGUcgGcc-GGGaAGcGGaGGCg -3' miRNA: 3'- aCUGCGUUAuaCauaCCCaUC-CC-CCG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 86199 | 0.66 | 0.997215 |
|
Target: 5'- aGGCGUAGgccAUGUuaacguuauaGGGcAGGGGGUg -3' miRNA: 3'- aCUGCGUUa--UACAua--------CCCaUCCCCCG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 167589 | 0.66 | 0.997215 |
|
Target: 5'- cGACGUc---UGaUGUGGGUgcuGGcGGGGCu -3' miRNA: 3'- aCUGCGuuauAC-AUACCCA---UC-CCCCG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 229658 | 0.66 | 0.997644 |
|
Target: 5'- cGGCgGCAGUGgcagGUGGGcgucGGGGCg -3' miRNA: 3'- aCUG-CGUUAUaca-UACCCauc-CCCCG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 215336 | 0.66 | 0.997644 |
|
Target: 5'- gGugGCGGUGUGgauccguUGGGUGGuGGaGUc -3' miRNA: 3'- aCugCGUUAUACau-----ACCCAUC-CCcCG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 108316 | 0.66 | 0.997946 |
|
Target: 5'- cUGACGCccgcaagcGUGcGGGgcgacGGGGGCa -3' miRNA: 3'- -ACUGCGuuaua---CAUaCCCau---CCCCCG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 120156 | 0.66 | 0.998017 |
|
Target: 5'- cGACGCAcaAUuccgaGUGccaccUGGGUgAGGGGaGCg -3' miRNA: 3'- aCUGCGU--UAua---CAU-----ACCCA-UCCCC-CG- -5' |
|||||||
| 15885 | 3' | -51.3 | NC_004065.1 | + | 62374 | 0.66 | 0.998017 |
|
Target: 5'- gGugGCGGcggggGUG-GUGGcGgcGGGGGUg -3' miRNA: 3'- aCugCGUUa----UACaUACC-CauCCCCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home