Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15885 | 3' | -51.3 | NC_004065.1 | + | 136765 | 0.68 | 0.985023 |
Target: 5'- gGAUGCGGgg-GgagagcGUGGGggaugcgGGGGGGCc -3' miRNA: 3'- aCUGCGUUauaCa-----UACCCa------UCCCCCG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 91126 | 0.68 | 0.985023 |
Target: 5'- aGGCcgaGUAGUcgGUGaugGGGUcguagaagacGGGGGGCa -3' miRNA: 3'- aCUG---CGUUAuaCAUa--CCCA----------UCCCCCG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 114912 | 0.69 | 0.983176 |
Target: 5'- gGugGCuccg-Gg--GGGUGGGGcGGCa -3' miRNA: 3'- aCugCGuuauaCauaCCCAUCCC-CCG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 45731 | 0.72 | 0.902747 |
Target: 5'- gGGCGCca-AUGgcguGGUAGGGGGCu -3' miRNA: 3'- aCUGCGuuaUACauacCCAUCCCCCG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 167188 | 0.75 | 0.80172 |
Target: 5'- gGA-GCcuUcgGgGUGGGUGGGGGGCa -3' miRNA: 3'- aCUgCGuuAuaCaUACCCAUCCCCCG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 141962 | 0.78 | 0.623332 |
Target: 5'- -uGCGCGGUAUGUAUaagcggagGGGUAGGGGaGUc -3' miRNA: 3'- acUGCGUUAUACAUA--------CCCAUCCCC-CG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 45766 | 1.14 | 0.00623 |
Target: 5'- gUGACGCAAUAUGUAUGGGUAGGGGGCg -3' miRNA: 3'- -ACUGCGUUAUACAUACCCAUCCCCCG- -5' |
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15885 | 3' | -51.3 | NC_004065.1 | + | 215336 | 0.66 | 0.997644 |
Target: 5'- gGugGCGGUGUGgauccguUGGGUGGuGGaGUc -3' miRNA: 3'- aCugCGUUAUACau-----ACCCAUC-CCcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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