miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 179094 0.66 0.91763
Target:  5'- -cGCCgCCCauguuucgcgUGCCCGUGA-ACCCCguGCCu -3'
miRNA:   3'- uuCGG-GGG----------AUGGGUAUUcUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 66729 0.66 0.91763
Target:  5'- uGGCgCCCgugCCGUcGGACCCCGgCg -3'
miRNA:   3'- uUCGgGGGaugGGUAuUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 206383 0.66 0.91763
Target:  5'- cGGGCUCCUgcgucgGCCCG--AGGCCagCCGCCc -3'
miRNA:   3'- -UUCGGGGGa-----UGGGUauUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 186409 0.66 0.91763
Target:  5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3'
miRNA:   3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 109613 0.66 0.91763
Target:  5'- -cGaCCCCCggGCCgc--GGugCCCACCa -3'
miRNA:   3'- uuC-GGGGGa-UGGguauUCugGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 225803 0.66 0.91763
Target:  5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3'
miRNA:   3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5'
15885 5' -57.5 NC_004065.1 + 145362 0.66 0.915386
Target:  5'- -uGCCCCCgguacuauaaauCCCA--GGGCUCCugCu -3'
miRNA:   3'- uuCGGGGGau----------GGGUauUCUGGGGugG- -5'
15885 5' -57.5 NC_004065.1 + 25272 0.66 0.911951
Target:  5'- -uGUCCCCgGCCUGUcGGgcguacACCCUACCg -3'
miRNA:   3'- uuCGGGGGaUGGGUAuUC------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 33198 0.66 0.911951
Target:  5'- -cGCCCgcaCCUGCCgCAgguGAccacgaccCCCCACCg -3'
miRNA:   3'- uuCGGG---GGAUGG-GUauuCU--------GGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 1751 0.66 0.911951
Target:  5'- --aUCCCCgcgaACCCuacGGGCCUCACCc -3'
miRNA:   3'- uucGGGGGa---UGGGuauUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 99127 0.66 0.911951
Target:  5'- cGAGCUCCacacACCuCAUGAgGACCUCACg -3'
miRNA:   3'- -UUCGGGGga--UGG-GUAUU-CUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 226502 0.66 0.911951
Target:  5'- gAGGUCUCgCUcuCCCAggcgAAGGCCCCuCCg -3'
miRNA:   3'- -UUCGGGG-GAu-GGGUa---UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 182707 0.66 0.906048
Target:  5'- -uGCCCCCcGCCgCGgaucGGCCUCACg -3'
miRNA:   3'- uuCGGGGGaUGG-GUauu-CUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 189539 0.66 0.906048
Target:  5'- uAGCCCgCgagcgGCCU---GGACCCCAgCg -3'
miRNA:   3'- uUCGGGgGa----UGGGuauUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 66991 0.66 0.906048
Target:  5'- cAAGCCgugaCCagucggcGCCCGUGuacGGGCCCCGCg -3'
miRNA:   3'- -UUCGGg---GGa------UGGGUAU---UCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 158058 0.66 0.906048
Target:  5'- -cGCCUCCgggcUGCCC----GGCUCCACCg -3'
miRNA:   3'- uuCGGGGG----AUGGGuauuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 90679 0.66 0.906048
Target:  5'- uGGCCCCCUugCCGgcgcuGGGCacgaacacgaUCCGCg -3'
miRNA:   3'- uUCGGGGGAugGGUau---UCUG----------GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 214594 0.66 0.906048
Target:  5'- aAAGCCgCCU-CCCGUGuaauuGAgCCgACCg -3'
miRNA:   3'- -UUCGGgGGAuGGGUAUu----CUgGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 96030 0.66 0.899923
Target:  5'- -cGCCCCCgcgUgCGUGggcacGGGCCCCgGCCg -3'
miRNA:   3'- uuCGGGGGau-GgGUAU-----UCUGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 222733 0.66 0.899923
Target:  5'- gGAGCUCCUcGCCCG--GGACCCaACg -3'
miRNA:   3'- -UUCGGGGGaUGGGUauUCUGGGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.