miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 90190 0.66 0.887017
Target:  5'- -cGCCCgCCU-CCCG--GGACUCCagGCCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUauUCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 108014 0.66 0.893578
Target:  5'- -cGCCCCCU-CCCGaccu-CCCgACCu -3'
miRNA:   3'- uuCGGGGGAuGGGUauucuGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 29205 0.66 0.887017
Target:  5'- -cGUCCCCgucgcCCCGUccGAuCCCCGCg -3'
miRNA:   3'- uuCGGGGGau---GGGUAuuCU-GGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 57932 0.66 0.887017
Target:  5'- aGAGCCgCCUcCCCc---GGCCCCuCCa -3'
miRNA:   3'- -UUCGGgGGAuGGGuauuCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 225803 0.66 0.91763
Target:  5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3'
miRNA:   3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5'
15885 5' -57.5 NC_004065.1 + 138330 0.66 0.887017
Target:  5'- gAGGCCUCCUcACCCAgggacAGGuuUCGCCu -3'
miRNA:   3'- -UUCGGGGGA-UGGGUau---UCUggGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 52537 0.66 0.887017
Target:  5'- --aCCCCCggcgGCCCcgccGUGcGcCCCCGCCg -3'
miRNA:   3'- uucGGGGGa---UGGG----UAUuCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 75412 0.66 0.893578
Target:  5'- -cGCCCCCgaagaGCUCAc-GGAUgaCCCGCCg -3'
miRNA:   3'- uuCGGGGGa----UGGGUauUCUG--GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 223764 0.66 0.893578
Target:  5'- cGGCUCCCU-CUCGU----CCCCGCCg -3'
miRNA:   3'- uUCGGGGGAuGGGUAuucuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 179094 0.66 0.91763
Target:  5'- -cGCCgCCCauguuucgcgUGCCCGUGA-ACCCCguGCCu -3'
miRNA:   3'- uuCGG-GGG----------AUGGGUAUUcUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 11935 0.66 0.887017
Target:  5'- uGGUgCCCUAUCCuuacGGACCgCUACCc -3'
miRNA:   3'- uUCGgGGGAUGGGuau-UCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 145362 0.66 0.915386
Target:  5'- -uGCCCCCgguacuauaaauCCCA--GGGCUCCugCu -3'
miRNA:   3'- uuCGGGGGau----------GGGUauUCUGGGGugG- -5'
15885 5' -57.5 NC_004065.1 + 222733 0.66 0.899923
Target:  5'- gGAGCUCCUcGCCCG--GGACCCaACg -3'
miRNA:   3'- -UUCGGGGGaUGGGUauUCUGGGgUGg -5'
15885 5' -57.5 NC_004065.1 + 90679 0.66 0.906048
Target:  5'- uGGCCCCCUugCCGgcgcuGGGCacgaacacgaUCCGCg -3'
miRNA:   3'- uUCGGGGGAugGGUau---UCUG----------GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 66991 0.66 0.906048
Target:  5'- cAAGCCgugaCCagucggcGCCCGUGuacGGGCCCCGCg -3'
miRNA:   3'- -UUCGGg---GGa------UGGGUAU---UCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 226502 0.66 0.911951
Target:  5'- gAGGUCUCgCUcuCCCAggcgAAGGCCCCuCCg -3'
miRNA:   3'- -UUCGGGG-GAu-GGGUa---UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 214594 0.66 0.906048
Target:  5'- aAAGCCgCCU-CCCGUGuaauuGAgCCgACCg -3'
miRNA:   3'- -UUCGGgGGAuGGGUAUu----CUgGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 25272 0.66 0.911951
Target:  5'- -uGUCCCCgGCCUGUcGGgcguacACCCUACCg -3'
miRNA:   3'- uuCGGGGGaUGGGUAuUC------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 109613 0.66 0.91763
Target:  5'- -cGaCCCCCggGCCgc--GGugCCCACCa -3'
miRNA:   3'- uuC-GGGGGa-UGGguauUCugGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 186409 0.66 0.91763
Target:  5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3'
miRNA:   3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.