miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 214594 0.66 0.906048
Target:  5'- aAAGCCgCCU-CCCGUGuaauuGAgCCgACCg -3'
miRNA:   3'- -UUCGGgGGAuGGGUAUu----CUgGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 225803 0.66 0.91763
Target:  5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3'
miRNA:   3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5'
15885 5' -57.5 NC_004065.1 + 66991 0.66 0.906048
Target:  5'- cAAGCCgugaCCagucggcGCCCGUGuacGGGCCCCGCg -3'
miRNA:   3'- -UUCGGg---GGa------UGGGUAU---UCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 186409 0.66 0.91763
Target:  5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3'
miRNA:   3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 189539 0.66 0.906048
Target:  5'- uAGCCCgCgagcgGCCU---GGACCCCAgCg -3'
miRNA:   3'- uUCGGGgGa----UGGGuauUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 90679 0.66 0.906048
Target:  5'- uGGCCCCCUugCCGgcgcuGGGCacgaacacgaUCCGCg -3'
miRNA:   3'- uUCGGGGGAugGGUau---UCUG----------GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 222733 0.66 0.899923
Target:  5'- gGAGCUCCUcGCCCG--GGACCCaACg -3'
miRNA:   3'- -UUCGGGGGaUGGGUauUCUGGGgUGg -5'
15885 5' -57.5 NC_004065.1 + 66729 0.66 0.91763
Target:  5'- uGGCgCCCgugCCGUcGGACCCCGgCg -3'
miRNA:   3'- uUCGgGGGaugGGUAuUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 223764 0.66 0.893578
Target:  5'- cGGCUCCCU-CUCGU----CCCCGCCg -3'
miRNA:   3'- uUCGGGGGAuGGGUAuucuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 145362 0.66 0.915386
Target:  5'- -uGCCCCCgguacuauaaauCCCA--GGGCUCCugCu -3'
miRNA:   3'- uuCGGGGGau----------GGGUauUCUGGGGugG- -5'
15885 5' -57.5 NC_004065.1 + 33869 0.67 0.883656
Target:  5'- gGAGCCCCCagauggcggaguCCCAggcgagggUGAGACcgcggaugccguaCCCGCCg -3'
miRNA:   3'- -UUCGGGGGau----------GGGU--------AUUCUG-------------GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 143815 0.67 0.880243
Target:  5'- --aCCCCCUGCCCuAUAAcguuaacauGGCCUaCGCCu -3'
miRNA:   3'- uucGGGGGAUGGG-UAUU---------CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 133133 0.67 0.873259
Target:  5'- -cGCCUUCga-CCGUGAG-CUCCACCa -3'
miRNA:   3'- uuCGGGGGaugGGUAUUCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 64160 0.67 0.858684
Target:  5'- -cGCCUUCgggaCCGUGAGagaccguccgGCCCCGCCg -3'
miRNA:   3'- uuCGGGGGaug-GGUAUUC----------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 28587 0.67 0.863876
Target:  5'- cGAGCCCCC-ACCCGaccAGGAgcugugguuccacuCCCgACCc -3'
miRNA:   3'- -UUCGGGGGaUGGGUa--UUCU--------------GGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 68238 0.67 0.866799
Target:  5'- cAGCCCCCggguuaaaaagaaagUCCGUGaccgggucggccgaaGGaACCCCACCg -3'
miRNA:   3'- uUCGGGGGau-------------GGGUAU---------------UC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 60192 0.67 0.851103
Target:  5'- cGGUUCCCgaGCCCGuUAAGAUCCCAgagcCCg -3'
miRNA:   3'- uUCGGGGGa-UGGGU-AUUCUGGGGU----GG- -5'
15885 5' -57.5 NC_004065.1 + 162451 0.67 0.851103
Target:  5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3'
miRNA:   3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.