Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 15885 | 5' | -57.5 | NC_004065.1 | + | 50564 | 0.72 | 0.600292 |
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Target: 5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3' miRNA: 3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 870 | 0.72 | 0.630127 |
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Target: 5'- uGAGCUaUCCU-CCCcgAGGAUCCCACCc -3' miRNA: 3'- -UUCGG-GGGAuGGGuaUUCUGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 127523 | 0.73 | 0.522157 |
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Target: 5'- -uGCCgCCUGCUCAU-GGGCCCCgucGCCg -3' miRNA: 3'- uuCGGgGGAUGGGUAuUCUGGGG---UGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 62837 | 0.74 | 0.51264 |
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Target: 5'- -uGCCCCCcACCCAccccgAAGGCUCCcCCg -3' miRNA: 3'- uuCGGGGGaUGGGUa----UUCUGGGGuGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 27792 | 0.74 | 0.475335 |
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Target: 5'- aGGGCCUCCUGcCCCAgcAGACgUCGCCc -3' miRNA: 3'- -UUCGGGGGAU-GGGUauUCUGgGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 44191 | 0.75 | 0.422072 |
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Target: 5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3' miRNA: 3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 42362 | 0.77 | 0.35696 |
|
Target: 5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3' miRNA: 3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 61433 | 0.78 | 0.312955 |
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Target: 5'- aGAGgCCCCUACCCAgggccGGCCCgACCc -3' miRNA: 3'- -UUCgGGGGAUGGGUauu--CUGGGgUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 184292 | 0.78 | 0.304664 |
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Target: 5'- gAAGCCCCCUACCacgccauuGGCgCCCGCCc -3' miRNA: 3'- -UUCGGGGGAUGGguauu---CUG-GGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 45803 | 1.08 | 0.003375 |
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Target: 5'- uAAGCCCCCUACCCAUAAGACCCCACCc -3' miRNA: 3'- -UUCGGGGGAUGGGUAUUCUGGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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