Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15885 | 5' | -57.5 | NC_004065.1 | + | 45803 | 1.08 | 0.003375 |
Target: 5'- uAAGCCCCCUACCCAUAAGACCCCACCc -3' miRNA: 3'- -UUCGGGGGAUGGGUAUUCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 184292 | 0.78 | 0.304664 |
Target: 5'- gAAGCCCCCUACCacgccauuGGCgCCCGCCc -3' miRNA: 3'- -UUCGGGGGAUGGguauu---CUG-GGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 61433 | 0.78 | 0.312955 |
Target: 5'- aGAGgCCCCUACCCAgggccGGCCCgACCc -3' miRNA: 3'- -UUCgGGGGAUGGGUauu--CUGGGgUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 42362 | 0.77 | 0.35696 |
Target: 5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3' miRNA: 3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 44191 | 0.75 | 0.422072 |
Target: 5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3' miRNA: 3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 62837 | 0.74 | 0.51264 |
Target: 5'- -uGCCCCCcACCCAccccgAAGGCUCCcCCg -3' miRNA: 3'- uuCGGGGGaUGGGUa----UUCUGGGGuGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 27792 | 0.74 | 0.475335 |
Target: 5'- aGGGCCUCCUGcCCCAgcAGACgUCGCCc -3' miRNA: 3'- -UUCGGGGGAU-GGGUauUCUGgGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 127523 | 0.73 | 0.522157 |
Target: 5'- -uGCCgCCUGCUCAU-GGGCCCCgucGCCg -3' miRNA: 3'- uuCGGgGGAUGGGUAuUCUGGGG---UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 870 | 0.72 | 0.630127 |
Target: 5'- uGAGCUaUCCU-CCCcgAGGAUCCCACCc -3' miRNA: 3'- -UUCGG-GGGAuGGGuaUUCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 50564 | 0.72 | 0.600292 |
Target: 5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3' miRNA: 3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 184257 | 0.71 | 0.679778 |
Target: 5'- -cGCCCCCUACCCAUAcauauuGCgUCACg -3' miRNA: 3'- uuCGGGGGAUGGGUAUuc----UGgGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 123909 | 0.71 | 0.679778 |
Target: 5'- -cGCCCCgUACCCc--AGGCCcaucuCCACCg -3' miRNA: 3'- uuCGGGGgAUGGGuauUCUGG-----GGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 205015 | 0.7 | 0.689628 |
Target: 5'- cGGCCCCUUgccgcGCCCAc-GGACgCCCACa -3' miRNA: 3'- uUCGGGGGA-----UGGGUauUCUG-GGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 220957 | 0.7 | 0.718875 |
Target: 5'- aGAGggCCCUACUCGUuAGAUUCCACCa -3' miRNA: 3'- -UUCggGGGAUGGGUAuUCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 78636 | 0.7 | 0.718875 |
Target: 5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3' miRNA: 3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 198227 | 0.7 | 0.709186 |
Target: 5'- cAGGCCCCCcgGCCUGUAgcccAGcACCCCgAUCa -3' miRNA: 3'- -UUCGGGGGa-UGGGUAU----UC-UGGGG-UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 29574 | 0.7 | 0.709186 |
Target: 5'- uGAGUCCCCUcuugaugaaGCCCuccgggGAGuCCCCgACCa -3' miRNA: 3'- -UUCGGGGGA---------UGGGua----UUCuGGGG-UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 86736 | 0.7 | 0.70724 |
Target: 5'- cGGCCCCCgacgccgccucgGCCCuugAAGcugccgcCCCCGCCg -3' miRNA: 3'- uUCGGGGGa-----------UGGGua-UUCu------GGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 114593 | 0.7 | 0.703341 |
Target: 5'- gGAGUgCCCUacgagggcugguaucGCCCucgcUAcGACCCCGCCg -3' miRNA: 3'- -UUCGgGGGA---------------UGGGu---AUuCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 47300 | 0.7 | 0.689628 |
Target: 5'- uGGCCCCggcgucGCCCGUGAGGCCgauCCGCg -3' miRNA: 3'- uUCGGGGga----UGGGUAUUCUGG---GGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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