miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 53403 0.68 0.827259
Target:  5'- -cGUCCCCggACCCGUcacggauAGuCCCCACg -3'
miRNA:   3'- uuCGGGGGa-UGGGUAu------UCuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 34340 0.68 0.835384
Target:  5'- -cGCCCCUUACCUAcacagcAAGcACgCCACCc -3'
miRNA:   3'- uuCGGGGGAUGGGUa-----UUC-UGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 171113 0.68 0.835384
Target:  5'- cAGCUUCCUGCCCAc----CCCCGCg -3'
miRNA:   3'- uUCGGGGGAUGGGUauucuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 229325 0.68 0.836187
Target:  5'- --aCCCCCgACCCAaaaccccgcggggggGGGuGCCCCGCCa -3'
miRNA:   3'- uucGGGGGaUGGGUa--------------UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 60192 0.67 0.851103
Target:  5'- cGGUUCCCgaGCCCGuUAAGAUCCCAgagcCCg -3'
miRNA:   3'- uUCGGGGGa-UGGGU-AUUCUGGGGU----GG- -5'
15885 5' -57.5 NC_004065.1 + 162451 0.67 0.851103
Target:  5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3'
miRNA:   3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 64160 0.67 0.858684
Target:  5'- -cGCCUUCgggaCCGUGAGagaccguccgGCCCCGCCg -3'
miRNA:   3'- uuCGGGGGaug-GGUAUUC----------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 28587 0.67 0.863876
Target:  5'- cGAGCCCCC-ACCCGaccAGGAgcugugguuccacuCCCgACCc -3'
miRNA:   3'- -UUCGGGGGaUGGGUa--UUCU--------------GGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 183836 0.67 0.866071
Target:  5'- -cGCCCCCUAuguggaaaguCCCuauGGGCCgCCAUUa -3'
miRNA:   3'- uuCGGGGGAU----------GGGuauUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 68238 0.67 0.866799
Target:  5'- cAGCCCCCggguuaaaaagaaagUCCGUGaccgggucggccgaaGGaACCCCACCg -3'
miRNA:   3'- uUCGGGGGau-------------GGGUAU---------------UC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 53975 0.67 0.871838
Target:  5'- aGAGCCCCCgaGCUCAcggUAAGGCauaguaaagaggCCGCCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGU---AUUCUGg-----------GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 32195 0.67 0.873259
Target:  5'- -cGCCCCUgggACCUGgacGACCCCAa- -3'
miRNA:   3'- uuCGGGGGa--UGGGUauuCUGGGGUgg -5'
15885 5' -57.5 NC_004065.1 + 133133 0.67 0.873259
Target:  5'- -cGCCUUCga-CCGUGAG-CUCCACCa -3'
miRNA:   3'- uuCGGGGGaugGGUAUUCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 138882 0.67 0.873259
Target:  5'- -uGCCCCCcguCUUcUAcGACCCCAUCa -3'
miRNA:   3'- uuCGGGGGau-GGGuAUuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 90124 0.67 0.880243
Target:  5'- -cGCCgCCgGCCg--GAGGCCCCGCg -3'
miRNA:   3'- uuCGGgGGaUGGguaUUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 62887 0.67 0.880243
Target:  5'- uGGCCuCCCUGCCCGUcgucaggcaugGGGACaUCCAa- -3'
miRNA:   3'- uUCGG-GGGAUGGGUA-----------UUCUG-GGGUgg -5'
15885 5' -57.5 NC_004065.1 + 143815 0.67 0.880243
Target:  5'- --aCCCCCUGCCCuAUAAcguuaacauGGCCUaCGCCu -3'
miRNA:   3'- uucGGGGGAUGGG-UAUU---------CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 33869 0.67 0.883656
Target:  5'- gGAGCCCCCagauggcggaguCCCAggcgagggUGAGACcgcggaugccguaCCCGCCg -3'
miRNA:   3'- -UUCGGGGGau----------GGGU--------AUUCUG-------------GGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.