Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15885 | 5' | -57.5 | NC_004065.1 | + | 33198 | 0.66 | 0.911951 |
Target: 5'- -cGCCCgcaCCUGCCgCAgguGAccacgaccCCCCACCg -3' miRNA: 3'- uuCGGG---GGAUGG-GUauuCU--------GGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 25272 | 0.66 | 0.911951 |
Target: 5'- -uGUCCCCgGCCUGUcGGgcguacACCCUACCg -3' miRNA: 3'- uuCGGGGGaUGGGUAuUC------UGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 226502 | 0.66 | 0.911951 |
Target: 5'- gAGGUCUCgCUcuCCCAggcgAAGGCCCCuCCg -3' miRNA: 3'- -UUCGGGG-GAu-GGGUa---UUCUGGGGuGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 145362 | 0.66 | 0.915386 |
Target: 5'- -uGCCCCCgguacuauaaauCCCA--GGGCUCCugCu -3' miRNA: 3'- uuCGGGGGau----------GGGUauUCUGGGGugG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 206383 | 0.66 | 0.91763 |
Target: 5'- cGGGCUCCUgcgucgGCCCG--AGGCCagCCGCCc -3' miRNA: 3'- -UUCGGGGGa-----UGGGUauUCUGG--GGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 66729 | 0.66 | 0.91763 |
Target: 5'- uGGCgCCCgugCCGUcGGACCCCGgCg -3' miRNA: 3'- uUCGgGGGaugGGUAuUCUGGGGUgG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 186409 | 0.66 | 0.91763 |
Target: 5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3' miRNA: 3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 225803 | 0.66 | 0.91763 |
Target: 5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3' miRNA: 3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 109613 | 0.66 | 0.91763 |
Target: 5'- -cGaCCCCCggGCCgc--GGugCCCACCa -3' miRNA: 3'- uuC-GGGGGa-UGGguauUCugGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 179094 | 0.66 | 0.91763 |
Target: 5'- -cGCCgCCCauguuucgcgUGCCCGUGA-ACCCCguGCCu -3' miRNA: 3'- uuCGG-GGG----------AUGGGUAUUcUGGGG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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