miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 87281 0.67 0.866071
Target:  5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3'
miRNA:   3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 94031 0.67 0.865342
Target:  5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3'
miRNA:   3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 28587 0.67 0.863876
Target:  5'- cGAGCCCCC-ACCCGaccAGGAgcugugguuccacuCCCgACCc -3'
miRNA:   3'- -UUCGGGGGaUGGGUa--UUCU--------------GGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 64160 0.67 0.858684
Target:  5'- -cGCCUUCgggaCCGUGAGagaccguccgGCCCCGCCg -3'
miRNA:   3'- uuCGGGGGaug-GGUAUUC----------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 60192 0.67 0.851103
Target:  5'- cGGUUCCCgaGCCCGuUAAGAUCCCAgagcCCg -3'
miRNA:   3'- uUCGGGGGa-UGGGU-AUUCUGGGGU----GG- -5'
15885 5' -57.5 NC_004065.1 + 162451 0.67 0.851103
Target:  5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3'
miRNA:   3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 229325 0.68 0.836187
Target:  5'- --aCCCCCgACCCAaaaccccgcggggggGGGuGCCCCGCCa -3'
miRNA:   3'- uucGGGGGaUGGGUa--------------UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 34340 0.68 0.835384
Target:  5'- -cGCCCCUUACCUAcacagcAAGcACgCCACCc -3'
miRNA:   3'- uuCGGGGGAUGGGUa-----UUC-UGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 171113 0.68 0.835384
Target:  5'- cAGCUUCCUGCCCAc----CCCCGCg -3'
miRNA:   3'- uUCGGGGGAUGGGUauucuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 53403 0.68 0.827259
Target:  5'- -cGUCCCCggACCCGUcacggauAGuCCCCACg -3'
miRNA:   3'- uuCGGGGGa-UGGGUAu------UCuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 125695 0.68 0.818965
Target:  5'- aGAGCgCCCUgACCCGaucaucccccUGGGGCgggCCCGCCu -3'
miRNA:   3'- -UUCGgGGGA-UGGGU----------AUUCUG---GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 66929 0.68 0.810511
Target:  5'- cGGGCCCCCaguuCUCGgugcGGCCCuCGCCg -3'
miRNA:   3'- -UUCGGGGGau--GGGUauu-CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 111501 0.68 0.802771
Target:  5'- cGAGUCCUCgaacgaagaugccgaACCCGagcgacAGGCCCCACCg -3'
miRNA:   3'- -UUCGGGGGa--------------UGGGUau----UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 99279 0.68 0.801904
Target:  5'- -cGUCCuCCUcCUCGUccGAUCCCACCg -3'
miRNA:   3'- uuCGGG-GGAuGGGUAuuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 179155 0.68 0.799293
Target:  5'- ---gCCCgUGCCCGUcgaucucuccgucaGAGGCCCCGCg -3'
miRNA:   3'- uucgGGGgAUGGGUA--------------UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 152590 0.69 0.793151
Target:  5'- --cCCCCCUcaccACCCcgGAGAUCCUGCg -3'
miRNA:   3'- uucGGGGGA----UGGGuaUUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 92616 0.69 0.793151
Target:  5'- -cGCCCCCUAaaC-UAGGuACgCCCACCu -3'
miRNA:   3'- uuCGGGGGAUggGuAUUC-UG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 2434 0.69 0.793151
Target:  5'- -cGCCCCgCUAuagcUCCGUccGAGACCCuCAUCg -3'
miRNA:   3'- uuCGGGG-GAU----GGGUA--UUCUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 37312 0.69 0.787833
Target:  5'- aGAGCCCCCggucgGCaCCAgcuuccgucauccgGAGcAgCCCACCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGUa-------------UUC-UgGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 27089 0.69 0.784261
Target:  5'- -cGUCCUCUcCCCA--GGACCCCgaacGCCa -3'
miRNA:   3'- uuCGGGGGAuGGGUauUCUGGGG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.