miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 870 0.72 0.630127
Target:  5'- uGAGCUaUCCU-CCCcgAGGAUCCCACCc -3'
miRNA:   3'- -UUCGG-GGGAuGGGuaUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 1751 0.66 0.911951
Target:  5'- --aUCCCCgcgaACCCuacGGGCCUCACCc -3'
miRNA:   3'- uucGGGGGa---UGGGuauUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 2434 0.69 0.793151
Target:  5'- -cGCCCCgCUAuagcUCCGUccGAGACCCuCAUCg -3'
miRNA:   3'- uuCGGGG-GAU----GGGUA--UUCUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 11935 0.66 0.887017
Target:  5'- uGGUgCCCUAUCCuuacGGACCgCUACCc -3'
miRNA:   3'- uUCGgGGGAUGGGuau-UCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 22516 0.69 0.778864
Target:  5'- uAAGCCCCacccggacaacgguaUUcCCCGUuccGGAUCCCACCu -3'
miRNA:   3'- -UUCGGGG---------------GAuGGGUAu--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 25272 0.66 0.911951
Target:  5'- -uGUCCCCgGCCUGUcGGgcguacACCCUACCg -3'
miRNA:   3'- uuCGGGGGaUGGGUAuUC------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 27089 0.69 0.784261
Target:  5'- -cGUCCUCUcCCCA--GGACCCCgaacGCCa -3'
miRNA:   3'- uuCGGGGGAuGGGUauUCUGGGG----UGG- -5'
15885 5' -57.5 NC_004065.1 + 27792 0.74 0.475335
Target:  5'- aGGGCCUCCUGcCCCAgcAGACgUCGCCc -3'
miRNA:   3'- -UUCGGGGGAU-GGGUauUCUGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 28587 0.67 0.863876
Target:  5'- cGAGCCCCC-ACCCGaccAGGAgcugugguuccacuCCCgACCc -3'
miRNA:   3'- -UUCGGGGGaUGGGUa--UUCU--------------GGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 29205 0.66 0.887017
Target:  5'- -cGUCCCCgucgcCCCGUccGAuCCCCGCg -3'
miRNA:   3'- uuCGGGGGau---GGGUAuuCU-GGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 29574 0.7 0.709186
Target:  5'- uGAGUCCCCUcuugaugaaGCCCuccgggGAGuCCCCgACCa -3'
miRNA:   3'- -UUCGGGGGA---------UGGGua----UUCuGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 32195 0.67 0.873259
Target:  5'- -cGCCCCUgggACCUGgacGACCCCAa- -3'
miRNA:   3'- uuCGGGGGa--UGGGUauuCUGGGGUgg -5'
15885 5' -57.5 NC_004065.1 + 33198 0.66 0.911951
Target:  5'- -cGCCCgcaCCUGCCgCAgguGAccacgaccCCCCACCg -3'
miRNA:   3'- uuCGGG---GGAUGG-GUauuCU--------GGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 33869 0.67 0.883656
Target:  5'- gGAGCCCCCagauggcggaguCCCAggcgagggUGAGACcgcggaugccguaCCCGCCg -3'
miRNA:   3'- -UUCGGGGGau----------GGGU--------AUUCUG-------------GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 34340 0.68 0.835384
Target:  5'- -cGCCCCUUACCUAcacagcAAGcACgCCACCc -3'
miRNA:   3'- uuCGGGGGAUGGGUa-----UUC-UGgGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 37312 0.69 0.787833
Target:  5'- aGAGCCCCCggucgGCaCCAgcuuccgucauccgGAGcAgCCCACCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGUa-------------UUC-UgGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 42362 0.77 0.35696
Target:  5'- cAGgCUCgUGCCCGU-GGACCCCGCCg -3'
miRNA:   3'- uUCgGGGgAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 44191 0.75 0.422072
Target:  5'- -cGCCCCCggACCCGaGAGACuCUCACUa -3'
miRNA:   3'- uuCGGGGGa-UGGGUaUUCUG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 45803 1.08 0.003375
Target:  5'- uAAGCCCCCUACCCAUAAGACCCCACCc -3'
miRNA:   3'- -UUCGGGGGAUGGGUAUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 47300 0.7 0.689628
Target:  5'- uGGCCCCggcgucGCCCGUGAGGCCgauCCGCg -3'
miRNA:   3'- uUCGGGGga----UGGGUAUUCUGG---GGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.