miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 47523 0.7 0.726577
Target:  5'- -cGCCCCUauugggaccaccGCCCAauUGGGACCaCCGCCc -3'
miRNA:   3'- uuCGGGGGa-----------UGGGU--AUUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 50564 0.72 0.600292
Target:  5'- uGGCCCCCacgcuCCCAUccucGAGcACCCUACUg -3'
miRNA:   3'- uUCGGGGGau---GGGUA----UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 50779 0.69 0.74749
Target:  5'- cAGCgCCCUGCCaaucagAAGACCaaaCACCc -3'
miRNA:   3'- uUCGgGGGAUGGgua---UUCUGGg--GUGG- -5'
15885 5' -57.5 NC_004065.1 + 52537 0.66 0.887017
Target:  5'- --aCCCCCggcgGCCCcgccGUGcGcCCCCGCCg -3'
miRNA:   3'- uucGGGGGa---UGGG----UAUuCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 53403 0.68 0.827259
Target:  5'- -cGUCCCCggACCCGUcacggauAGuCCCCACg -3'
miRNA:   3'- uuCGGGGGa-UGGGUAu------UCuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 53975 0.67 0.871838
Target:  5'- aGAGCCCCCgaGCUCAcggUAAGGCauaguaaagaggCCGCCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGU---AUUCUGg-----------GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 57932 0.66 0.887017
Target:  5'- aGAGCCgCCUcCCCc---GGCCCCuCCa -3'
miRNA:   3'- -UUCGGgGGAuGGGuauuCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 60192 0.67 0.851103
Target:  5'- cGGUUCCCgaGCCCGuUAAGAUCCCAgagcCCg -3'
miRNA:   3'- uUCGGGGGa-UGGGU-AUUCUGGGGU----GG- -5'
15885 5' -57.5 NC_004065.1 + 61433 0.78 0.312955
Target:  5'- aGAGgCCCCUACCCAgggccGGCCCgACCc -3'
miRNA:   3'- -UUCgGGGGAUGGGUauu--CUGGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 62837 0.74 0.51264
Target:  5'- -uGCCCCCcACCCAccccgAAGGCUCCcCCg -3'
miRNA:   3'- uuCGGGGGaUGGGUa----UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 62887 0.67 0.880243
Target:  5'- uGGCCuCCCUGCCCGUcgucaggcaugGGGACaUCCAa- -3'
miRNA:   3'- uUCGG-GGGAUGGGUA-----------UUCUG-GGGUgg -5'
15885 5' -57.5 NC_004065.1 + 64160 0.67 0.858684
Target:  5'- -cGCCUUCgggaCCGUGAGagaccguccgGCCCCGCCg -3'
miRNA:   3'- uuCGGGGGaug-GGUAUUC----------UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 66729 0.66 0.91763
Target:  5'- uGGCgCCCgugCCGUcGGACCCCGgCg -3'
miRNA:   3'- uUCGgGGGaugGGUAuUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 66929 0.68 0.810511
Target:  5'- cGGGCCCCCaguuCUCGgugcGGCCCuCGCCg -3'
miRNA:   3'- -UUCGGGGGau--GGGUauu-CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 66991 0.66 0.906048
Target:  5'- cAAGCCgugaCCagucggcGCCCGUGuacGGGCCCCGCg -3'
miRNA:   3'- -UUCGGg---GGa------UGGGUAU---UCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 68238 0.67 0.866799
Target:  5'- cAGCCCCCggguuaaaaagaaagUCCGUGaccgggucggccgaaGGaACCCCACCg -3'
miRNA:   3'- uUCGGGGGau-------------GGGUAU---------------UC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 75412 0.66 0.893578
Target:  5'- -cGCCCCCgaagaGCUCAc-GGAUgaCCCGCCg -3'
miRNA:   3'- uuCGGGGGa----UGGGUauUCUG--GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 78636 0.7 0.718875
Target:  5'- -cGCCUCCgccACCCAaGAGAUCggCCGCCa -3'
miRNA:   3'- uuCGGGGGa--UGGGUaUUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 83456 0.69 0.775242
Target:  5'- --uCCCCUUACCCGc--GACCCCuaGCCc -3'
miRNA:   3'- uucGGGGGAUGGGUauuCUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 86736 0.7 0.70724
Target:  5'- cGGCCCCCgacgccgccucgGCCCuugAAGcugccgcCCCCGCCg -3'
miRNA:   3'- uUCGGGGGa-----------UGGGua-UUCu------GGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.