Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15885 | 5' | -57.5 | NC_004065.1 | + | 87281 | 0.67 | 0.866071 |
Target: 5'- aGGGCgCCCUGaucgcaauauccCCCAUAuccuGCUCCACCg -3' miRNA: 3'- -UUCGgGGGAU------------GGGUAUuc--UGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 90124 | 0.67 | 0.880243 |
Target: 5'- -cGCCgCCgGCCg--GAGGCCCCGCg -3' miRNA: 3'- uuCGGgGGaUGGguaUUCUGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 90190 | 0.66 | 0.887017 |
Target: 5'- -cGCCCgCCU-CCCG--GGACUCCagGCCg -3' miRNA: 3'- uuCGGG-GGAuGGGUauUCUGGGG--UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 90679 | 0.66 | 0.906048 |
Target: 5'- uGGCCCCCUugCCGgcgcuGGGCacgaacacgaUCCGCg -3' miRNA: 3'- uUCGGGGGAugGGUau---UCUG----------GGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 92616 | 0.69 | 0.793151 |
Target: 5'- -cGCCCCCUAaaC-UAGGuACgCCCACCu -3' miRNA: 3'- uuCGGGGGAUggGuAUUC-UG-GGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 94031 | 0.67 | 0.865342 |
Target: 5'- -uGCUCCCUGCCCA--GGucccgguucccgaAUCCCGCUc -3' miRNA: 3'- uuCGGGGGAUGGGUauUC-------------UGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 96030 | 0.66 | 0.899923 |
Target: 5'- -cGCCCCCgcgUgCGUGggcacGGGCCCCgGCCg -3' miRNA: 3'- uuCGGGGGau-GgGUAU-----UCUGGGG-UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 99127 | 0.66 | 0.911951 |
Target: 5'- cGAGCUCCacacACCuCAUGAgGACCUCACg -3' miRNA: 3'- -UUCGGGGga--UGG-GUAUU-CUGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 99279 | 0.68 | 0.801904 |
Target: 5'- -cGUCCuCCUcCUCGUccGAUCCCACCg -3' miRNA: 3'- uuCGGG-GGAuGGGUAuuCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 108014 | 0.66 | 0.893578 |
Target: 5'- -cGCCCCCU-CCCGaccu-CCCgACCu -3' miRNA: 3'- uuCGGGGGAuGGGUauucuGGGgUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 109080 | 0.7 | 0.709186 |
Target: 5'- --cCCCCgCUACCC---GGACCCgACCg -3' miRNA: 3'- uucGGGG-GAUGGGuauUCUGGGgUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 109613 | 0.66 | 0.91763 |
Target: 5'- -cGaCCCCCggGCCgc--GGugCCCACCa -3' miRNA: 3'- uuC-GGGGGa-UGGguauUCugGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 111501 | 0.68 | 0.802771 |
Target: 5'- cGAGUCCUCgaacgaagaugccgaACCCGagcgacAGGCCCCACCg -3' miRNA: 3'- -UUCGGGGGa--------------UGGGUau----UCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 114593 | 0.7 | 0.703341 |
Target: 5'- gGAGUgCCCUacgagggcugguaucGCCCucgcUAcGACCCCGCCg -3' miRNA: 3'- -UUCGgGGGA---------------UGGGu---AUuCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 123909 | 0.71 | 0.679778 |
Target: 5'- -cGCCCCgUACCCc--AGGCCcaucuCCACCg -3' miRNA: 3'- uuCGGGGgAUGGGuauUCUGG-----GGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 125695 | 0.68 | 0.818965 |
Target: 5'- aGAGCgCCCUgACCCGaucaucccccUGGGGCgggCCCGCCu -3' miRNA: 3'- -UUCGgGGGA-UGGGU----------AUUCUG---GGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 127523 | 0.73 | 0.522157 |
Target: 5'- -uGCCgCCUGCUCAU-GGGCCCCgucGCCg -3' miRNA: 3'- uuCGGgGGAUGGGUAuUCUGGGG---UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 133133 | 0.67 | 0.873259 |
Target: 5'- -cGCCUUCga-CCGUGAG-CUCCACCa -3' miRNA: 3'- uuCGGGGGaugGGUAUUCuGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 138330 | 0.66 | 0.887017 |
Target: 5'- gAGGCCUCCUcACCCAgggacAGGuuUCGCCu -3' miRNA: 3'- -UUCGGGGGA-UGGGUau---UCUggGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 138882 | 0.67 | 0.873259 |
Target: 5'- -uGCCCCCcguCUUcUAcGACCCCAUCa -3' miRNA: 3'- uuCGGGGGau-GGGuAUuCUGGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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