Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15885 | 5' | -57.5 | NC_004065.1 | + | 143815 | 0.67 | 0.880243 |
Target: 5'- --aCCCCCUGCCCuAUAAcguuaacauGGCCUaCGCCu -3' miRNA: 3'- uucGGGGGAUGGG-UAUU---------CUGGG-GUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 145362 | 0.66 | 0.915386 |
Target: 5'- -uGCCCCCgguacuauaaauCCCA--GGGCUCCugCu -3' miRNA: 3'- uuCGGGGGau----------GGGUauUCUGGGGugG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 152590 | 0.69 | 0.793151 |
Target: 5'- --cCCCCCUcaccACCCcgGAGAUCCUGCg -3' miRNA: 3'- uucGGGGGA----UGGGuaUUCUGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 158058 | 0.66 | 0.906048 |
Target: 5'- -cGCCUCCgggcUGCCC----GGCUCCACCg -3' miRNA: 3'- uuCGGGGG----AUGGGuauuCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 162451 | 0.67 | 0.851103 |
Target: 5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3' miRNA: 3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 171113 | 0.68 | 0.835384 |
Target: 5'- cAGCUUCCUGCCCAc----CCCCGCg -3' miRNA: 3'- uUCGGGGGAUGGGUauucuGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 173646 | 0.7 | 0.718875 |
Target: 5'- gGAGCgCUCCgACCCugccGGACCCCGuCCa -3' miRNA: 3'- -UUCG-GGGGaUGGGuau-UCUGGGGU-GG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 179094 | 0.66 | 0.91763 |
Target: 5'- -cGCCgCCCauguuucgcgUGCCCGUGA-ACCCCguGCCu -3' miRNA: 3'- uuCGG-GGG----------AUGGGUAUUcUGGGG--UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 179155 | 0.68 | 0.799293 |
Target: 5'- ---gCCCgUGCCCGUcgaucucuccgucaGAGGCCCCGCg -3' miRNA: 3'- uucgGGGgAUGGGUA--------------UUCUGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 182707 | 0.66 | 0.906048 |
Target: 5'- -uGCCCCCcGCCgCGgaucGGCCUCACg -3' miRNA: 3'- uuCGGGGGaUGG-GUauu-CUGGGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 183131 | 0.69 | 0.775242 |
Target: 5'- cGGCCCCCUccaGgCCGUGcauCCUCGCCg -3' miRNA: 3'- uUCGGGGGA---UgGGUAUucuGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 183836 | 0.67 | 0.866071 |
Target: 5'- -cGCCCCCUAuguggaaaguCCCuauGGGCCgCCAUUa -3' miRNA: 3'- uuCGGGGGAU----------GGGuauUCUGG-GGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 184257 | 0.71 | 0.679778 |
Target: 5'- -cGCCCCCUACCCAUAcauauuGCgUCACg -3' miRNA: 3'- uuCGGGGGAUGGGUAUuc----UGgGGUGg -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 184292 | 0.78 | 0.304664 |
Target: 5'- gAAGCCCCCUACCacgccauuGGCgCCCGCCc -3' miRNA: 3'- -UUCGGGGGAUGGguauu---CUG-GGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 186409 | 0.66 | 0.91763 |
Target: 5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3' miRNA: 3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 189539 | 0.66 | 0.906048 |
Target: 5'- uAGCCCgCgagcgGCCU---GGACCCCAgCg -3' miRNA: 3'- uUCGGGgGa----UGGGuauUCUGGGGUgG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 194165 | 0.69 | 0.766101 |
Target: 5'- aAGGCUUCCUcgggauCCCcccgggggugGUAAGACUCCGCCg -3' miRNA: 3'- -UUCGGGGGAu-----GGG----------UAUUCUGGGGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 198227 | 0.7 | 0.709186 |
Target: 5'- cAGGCCCCCcgGCCUGUAgcccAGcACCCCgAUCa -3' miRNA: 3'- -UUCGGGGGa-UGGGUAU----UC-UGGGG-UGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 198929 | 0.66 | 0.893578 |
Target: 5'- -uGCCCgCUccACCCuggcggccAAGGCCgCCGCCa -3' miRNA: 3'- uuCGGGgGA--UGGGua------UUCUGG-GGUGG- -5' |
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15885 | 5' | -57.5 | NC_004065.1 | + | 204327 | 0.69 | 0.766101 |
Target: 5'- cGGGCCCCCggacgACgCCAucUAcuACCUCGCCg -3' miRNA: 3'- -UUCGGGGGa----UG-GGU--AUucUGGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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