Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15885 | 5' | -57.5 | NC_004065.1 | + | 205015 | 0.7 | 0.689628 |
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Target: 5'- cGGCCCCUUgccgcGCCCAc-GGACgCCCACa -3' miRNA: 3'- uUCGGGGGA-----UGGGUauUCUG-GGGUGg -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 206383 | 0.66 | 0.91763 |
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Target: 5'- cGGGCUCCUgcgucgGCCCG--AGGCCagCCGCCc -3' miRNA: 3'- -UUCGGGGGa-----UGGGUauUCUGG--GGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 214594 | 0.66 | 0.906048 |
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Target: 5'- aAAGCCgCCU-CCCGUGuaauuGAgCCgACCg -3' miRNA: 3'- -UUCGGgGGAuGGGUAUu----CUgGGgUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 220957 | 0.7 | 0.718875 |
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Target: 5'- aGAGggCCCUACUCGUuAGAUUCCACCa -3' miRNA: 3'- -UUCggGGGAUGGGUAuUCUGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 222733 | 0.66 | 0.899923 |
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Target: 5'- gGAGCUCCUcGCCCG--GGACCCaACg -3' miRNA: 3'- -UUCGGGGGaUGGGUauUCUGGGgUGg -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 223764 | 0.66 | 0.893578 |
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Target: 5'- cGGCUCCCU-CUCGU----CCCCGCCg -3' miRNA: 3'- uUCGGGGGAuGGGUAuucuGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 225803 | 0.66 | 0.91763 |
|
Target: 5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3' miRNA: 3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 226502 | 0.66 | 0.911951 |
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Target: 5'- gAGGUCUCgCUcuCCCAggcgAAGGCCCCuCCg -3' miRNA: 3'- -UUCGGGG-GAu-GGGUa---UUCUGGGGuGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 229325 | 0.68 | 0.836187 |
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Target: 5'- --aCCCCCgACCCAaaaccccgcggggggGGGuGCCCCGCCa -3' miRNA: 3'- uucGGGGGaUGGGUa--------------UUC-UGGGGUGG- -5' |
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| 15885 | 5' | -57.5 | NC_004065.1 | + | 229990 | 0.69 | 0.775242 |
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Target: 5'- uAGCCCCCccaucaaaaUACCCccccgGGGGCCCgCGCg -3' miRNA: 3'- uUCGGGGG---------AUGGGua---UUCUGGG-GUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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