miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 229990 0.69 0.775242
Target:  5'- uAGCCCCCccaucaaaaUACCCccccgGGGGCCCgCGCg -3'
miRNA:   3'- uUCGGGGG---------AUGGGua---UUCUGGG-GUGg -5'
15885 5' -57.5 NC_004065.1 + 229325 0.68 0.836187
Target:  5'- --aCCCCCgACCCAaaaccccgcggggggGGGuGCCCCGCCa -3'
miRNA:   3'- uucGGGGGaUGGGUa--------------UUC-UGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 226502 0.66 0.911951
Target:  5'- gAGGUCUCgCUcuCCCAggcgAAGGCCCCuCCg -3'
miRNA:   3'- -UUCGGGG-GAu-GGGUa---UUCUGGGGuGG- -5'
15885 5' -57.5 NC_004065.1 + 225803 0.66 0.91763
Target:  5'- aGGGUCCCCgcgGCCCAggccuGGuCCUgaagCACCa -3'
miRNA:   3'- -UUCGGGGGa--UGGGUau---UCuGGG----GUGG- -5'
15885 5' -57.5 NC_004065.1 + 223764 0.66 0.893578
Target:  5'- cGGCUCCCU-CUCGU----CCCCGCCg -3'
miRNA:   3'- uUCGGGGGAuGGGUAuucuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 222733 0.66 0.899923
Target:  5'- gGAGCUCCUcGCCCG--GGACCCaACg -3'
miRNA:   3'- -UUCGGGGGaUGGGUauUCUGGGgUGg -5'
15885 5' -57.5 NC_004065.1 + 220957 0.7 0.718875
Target:  5'- aGAGggCCCUACUCGUuAGAUUCCACCa -3'
miRNA:   3'- -UUCggGGGAUGGGUAuUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 214594 0.66 0.906048
Target:  5'- aAAGCCgCCU-CCCGUGuaauuGAgCCgACCg -3'
miRNA:   3'- -UUCGGgGGAuGGGUAUu----CUgGGgUGG- -5'
15885 5' -57.5 NC_004065.1 + 206383 0.66 0.91763
Target:  5'- cGGGCUCCUgcgucgGCCCG--AGGCCagCCGCCc -3'
miRNA:   3'- -UUCGGGGGa-----UGGGUauUCUGG--GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 205015 0.7 0.689628
Target:  5'- cGGCCCCUUgccgcGCCCAc-GGACgCCCACa -3'
miRNA:   3'- uUCGGGGGA-----UGGGUauUCUG-GGGUGg -5'
15885 5' -57.5 NC_004065.1 + 204327 0.69 0.766101
Target:  5'- cGGGCCCCCggacgACgCCAucUAcuACCUCGCCg -3'
miRNA:   3'- -UUCGGGGGa----UG-GGU--AUucUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 198929 0.66 0.893578
Target:  5'- -uGCCCgCUccACCCuggcggccAAGGCCgCCGCCa -3'
miRNA:   3'- uuCGGGgGA--UGGGua------UUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 198227 0.7 0.709186
Target:  5'- cAGGCCCCCcgGCCUGUAgcccAGcACCCCgAUCa -3'
miRNA:   3'- -UUCGGGGGa-UGGGUAU----UC-UGGGG-UGG- -5'
15885 5' -57.5 NC_004065.1 + 194165 0.69 0.766101
Target:  5'- aAGGCUUCCUcgggauCCCcccgggggugGUAAGACUCCGCCg -3'
miRNA:   3'- -UUCGGGGGAu-----GGG----------UAUUCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 189539 0.66 0.906048
Target:  5'- uAGCCCgCgagcgGCCU---GGACCCCAgCg -3'
miRNA:   3'- uUCGGGgGa----UGGGuauUCUGGGGUgG- -5'
15885 5' -57.5 NC_004065.1 + 186409 0.66 0.91763
Target:  5'- cAGCaCCCCgucCUCuugauGGGCCUCACCg -3'
miRNA:   3'- uUCG-GGGGau-GGGuau--UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 184292 0.78 0.304664
Target:  5'- gAAGCCCCCUACCacgccauuGGCgCCCGCCc -3'
miRNA:   3'- -UUCGGGGGAUGGguauu---CUG-GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 184257 0.71 0.679778
Target:  5'- -cGCCCCCUACCCAUAcauauuGCgUCACg -3'
miRNA:   3'- uuCGGGGGAUGGGUAUuc----UGgGGUGg -5'
15885 5' -57.5 NC_004065.1 + 183836 0.67 0.866071
Target:  5'- -cGCCCCCUAuguggaaaguCCCuauGGGCCgCCAUUa -3'
miRNA:   3'- uuCGGGGGAU----------GGGuauUCUGG-GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 183131 0.69 0.775242
Target:  5'- cGGCCCCCUccaGgCCGUGcauCCUCGCCg -3'
miRNA:   3'- uUCGGGGGA---UgGGUAUucuGGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.