miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15885 5' -57.5 NC_004065.1 + 182707 0.66 0.906048
Target:  5'- -uGCCCCCcGCCgCGgaucGGCCUCACg -3'
miRNA:   3'- uuCGGGGGaUGG-GUauu-CUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 179155 0.68 0.799293
Target:  5'- ---gCCCgUGCCCGUcgaucucuccgucaGAGGCCCCGCg -3'
miRNA:   3'- uucgGGGgAUGGGUA--------------UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 179094 0.66 0.91763
Target:  5'- -cGCCgCCCauguuucgcgUGCCCGUGA-ACCCCguGCCu -3'
miRNA:   3'- uuCGG-GGG----------AUGGGUAUUcUGGGG--UGG- -5'
15885 5' -57.5 NC_004065.1 + 173646 0.7 0.718875
Target:  5'- gGAGCgCUCCgACCCugccGGACCCCGuCCa -3'
miRNA:   3'- -UUCG-GGGGaUGGGuau-UCUGGGGU-GG- -5'
15885 5' -57.5 NC_004065.1 + 171113 0.68 0.835384
Target:  5'- cAGCUUCCUGCCCAc----CCCCGCg -3'
miRNA:   3'- uUCGGGGGAUGGGUauucuGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 162451 0.67 0.851103
Target:  5'- cGAGgCCCCUGCgCuucggcgAAGGCCUCGCg -3'
miRNA:   3'- -UUCgGGGGAUGgGua-----UUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 158058 0.66 0.906048
Target:  5'- -cGCCUCCgggcUGCCC----GGCUCCACCg -3'
miRNA:   3'- uuCGGGGG----AUGGGuauuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 152590 0.69 0.793151
Target:  5'- --cCCCCCUcaccACCCcgGAGAUCCUGCg -3'
miRNA:   3'- uucGGGGGA----UGGGuaUUCUGGGGUGg -5'
15885 5' -57.5 NC_004065.1 + 145362 0.66 0.915386
Target:  5'- -uGCCCCCgguacuauaaauCCCA--GGGCUCCugCu -3'
miRNA:   3'- uuCGGGGGau----------GGGUauUCUGGGGugG- -5'
15885 5' -57.5 NC_004065.1 + 143815 0.67 0.880243
Target:  5'- --aCCCCCUGCCCuAUAAcguuaacauGGCCUaCGCCu -3'
miRNA:   3'- uucGGGGGAUGGG-UAUU---------CUGGG-GUGG- -5'
15885 5' -57.5 NC_004065.1 + 138882 0.67 0.873259
Target:  5'- -uGCCCCCcguCUUcUAcGACCCCAUCa -3'
miRNA:   3'- uuCGGGGGau-GGGuAUuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 138330 0.66 0.887017
Target:  5'- gAGGCCUCCUcACCCAgggacAGGuuUCGCCu -3'
miRNA:   3'- -UUCGGGGGA-UGGGUau---UCUggGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 133133 0.67 0.873259
Target:  5'- -cGCCUUCga-CCGUGAG-CUCCACCa -3'
miRNA:   3'- uuCGGGGGaugGGUAUUCuGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 127523 0.73 0.522157
Target:  5'- -uGCCgCCUGCUCAU-GGGCCCCgucGCCg -3'
miRNA:   3'- uuCGGgGGAUGGGUAuUCUGGGG---UGG- -5'
15885 5' -57.5 NC_004065.1 + 125695 0.68 0.818965
Target:  5'- aGAGCgCCCUgACCCGaucaucccccUGGGGCgggCCCGCCu -3'
miRNA:   3'- -UUCGgGGGA-UGGGU----------AUUCUG---GGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 123909 0.71 0.679778
Target:  5'- -cGCCCCgUACCCc--AGGCCcaucuCCACCg -3'
miRNA:   3'- uuCGGGGgAUGGGuauUCUGG-----GGUGG- -5'
15885 5' -57.5 NC_004065.1 + 114593 0.7 0.703341
Target:  5'- gGAGUgCCCUacgagggcugguaucGCCCucgcUAcGACCCCGCCg -3'
miRNA:   3'- -UUCGgGGGA---------------UGGGu---AUuCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 111501 0.68 0.802771
Target:  5'- cGAGUCCUCgaacgaagaugccgaACCCGagcgacAGGCCCCACCg -3'
miRNA:   3'- -UUCGGGGGa--------------UGGGUau----UCUGGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 109613 0.66 0.91763
Target:  5'- -cGaCCCCCggGCCgc--GGugCCCACCa -3'
miRNA:   3'- uuC-GGGGGa-UGGguauUCugGGGUGG- -5'
15885 5' -57.5 NC_004065.1 + 109080 0.7 0.709186
Target:  5'- --cCCCCgCUACCC---GGACCCgACCg -3'
miRNA:   3'- uucGGGG-GAUGGGuauUCUGGGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.